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Package 169/353HostnameOS / ArchBUILDCHECKBUILD BIN
HilbertVisGUI 1.4.0
Simon Anders
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/HilbertVisGUI
Last Changed Rev: 42684 / Revision: 43539
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: HilbertVisGUI
Version: 1.4.0
Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes HilbertVisGUI_1.4.0.tar.gz
StartedAt: 2009-12-14 05:18:50 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 05:19:46 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 56.7 seconds
RetCode: 0
Status: WARNINGS
CheckDir: HilbertVisGUI.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... WARNING
Non-portable flags in variable 'PKG_CFLAGS':
  -mms-bitfields
Non-portable flags in variable 'PKG_CPPFLAGS':
  -mms-bitfields
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.5-bioc/meat/HilbertVisGUI.Rcheck/00check.log
for details

HilbertVisGUI.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'HilbertVisGUI' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS    `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS   -O3 -Wall  -std=gnu99 -c R_env_prot.c -o R_env_prot.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS       -O2 -Wall  -c R_interface.cc -o R_interface.o
In file included from e:/biocbld/bbs-2.5-bioc/R/include/R.h:50,
                 from R_interface.cc:17:
e:/biocbld/bbs-2.5-bioc/R/include/R_ext/RS.h:43:1: warning: "ERROR" redefined
In file included from c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/../../../../include/windows.h:52,
                 from R_interface.cc:13:
c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:510: warning: comparison between signed and unsigned integer expressions
R_interface.cc:509: warning: unused variable 'palette_level'
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702: warning: comparison between signed and unsigned integer expressions
R_interface.cc: In function 'RDataVector<double>* create_normal_or_Rle_RDataVector(SEXPREC*, long int, binning_mode)':
R_interface.cc:431: warning: control reaches end of non-void function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:119: warning: 'val' may be used uninitialized in this function
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:180: warning: 'val' may be used uninitialized in this function
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXPREC*)':
R_interface.cc:535: warning: 'datavec' may be used uninitialized in this function
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS       -O2 -Wall  -c colorizers.cc -o colorizers.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS       -O2 -Wall  -c display.cc -o display.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS       -O2 -Wall  -c ruler.cc -o ruler.o
g++ -I"e:/biocbld/bbs-2.5-bioc/R/include" `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DMSWINDOWS       -O2 -Wall  -c window.cc -o window.o
g++ -shared -s -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -LC:/gtkmm/lib -lgtkmm-2.4 -lgiomm-2.4 -lgdkmm-2.4 -latkmm-1.6 -lgtk-win32-2.0 -lpangomm-1.4 -lcairomm-1.0 -lglibmm-2.4 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lgdk_pixbuf-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lintl -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: lattice
** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (HilbertVisGUI)