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Package 55/353HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrix 1.10.0
Benjamin Milo Bolstad
Snapshot Date: 2009-12-13 23:30:35 -0800 (Sun, 13 Dec 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/BufferedMatrix
Last Changed Rev: 42684 / Revision: 43539
Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: BufferedMatrix
Version: 1.10.0
Command: /home/biocbuild/bbs-2.5-bioc/R/bin/R CMD check --no-vignettes BufferedMatrix_1.10.0.tar.gz
StartedAt: 2009-12-14 03:46:36 -0800 (Mon, 14 Dec 2009)
EndedAt: 2009-12-14 03:47:01 -0800 (Mon, 14 Dec 2009)
EllapsedTime: 24.5 seconds
RetCode: 0
Status: OK
CheckDir: BufferedMatrix.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.5-bioc/meat/BufferedMatrix.Rcheck'
* using R version 2.10.0 (2009-10-26)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'BufferedMatrix/DESCRIPTION' ... OK
* this is package 'BufferedMatrix' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrix' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: createBufferedMatrix.Rd:26: Dropping empty section \keyword
prepare_Rd: createBufferedMatrix.Rd:17-18: Dropping empty section \details
prepare_Rd: createBufferedMatrix.Rd:15-16: Dropping empty section \value
prepare_Rd: createBufferedMatrix.Rd:19-20: Dropping empty section \references
prepare_Rd: createBufferedMatrix.Rd:21-22: Dropping empty section \seealso
prepare_Rd: createBufferedMatrix.Rd:23-24: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... NONE
* checking tests ...
  Running ‘c_code_level_tests.R’
  Running ‘objectTesting.R’
  Running ‘rawCalltesting.R’
  Running ‘Rcodetesting.R’
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

BufferedMatrix.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘BufferedMatrix’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c RBufferedMatrix.c -o RBufferedMatrix.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:3327: warning: ‘sort_double’ defined but not used
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.5-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c init_package.c -o init_package.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o BufferedMatrix.so RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o -L/home/biocbuild/bbs-2.5-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Creating a generic for "rowMeans" in package "BufferedMatrix"
    (the supplied definition differs from and overrides the implicit generic
    in package "base": Formal arguments differ (in default values?))
Creating a generic for "rowSums" in package "BufferedMatrix"
    (the supplied definition differs from and overrides the implicit generic
    in package "base": Formal arguments differ (in default values?))
Creating a generic for "colMeans" in package "BufferedMatrix"
    (the supplied definition differs from and overrides the implicit generic
    in package "base": Formal arguments differ (in default values?))
Creating a generic for "colSums" in package "BufferedMatrix"
    (the supplied definition differs from and overrides the implicit generic
    in package "base": Formal arguments differ (in default values?))
Creating a new generic function for "ncol" in "BufferedMatrix"
Creating a new generic function for "nrow" in "BufferedMatrix"
Creating a new generic function for "mean" in "BufferedMatrix"
Creating a new generic function for "as.matrix" in "BufferedMatrix"
** help
*** installing help indices
** building package indices ...
* DONE (BufferedMatrix)