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Package 282/319HostnameOS / ArchBUILDCHECKBUILD BIN
simulatorAPMS 1.16.0
Tony Chiang
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/simulatorAPMS
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: simulatorAPMS
Version: 1.16.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build simulatorAPMS
StartedAt: 2009-10-20 14:39:30 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:40:02 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 31.6 seconds
RetCode: 0
Status: OK
PackageFile: simulatorAPMS_1.16.0.tar.gz
PackageFileSize: 171.5 KiB

Command output

* checking for file 'simulatorAPMS/DESCRIPTION' ... OK
* preparing 'simulatorAPMS':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'simulatorAPMS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RpsiXML
Loading required package: annotate
Loading required package: graph
Loading required package: RBGL
Loading required package: hypergraph

Attaching package: 'hypergraph'


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

Warning in namespaceImportFrom(self, asNamespace(ns)) :
  replacing previous import: addNode
Loading required package: apComplex
** help
*** installing help indices
 >>> Building/Updating help pages for package 'simulatorAPMS'
     Formats: text html latex example chm 
Note: removing empty section \source in file 'APComEX.Rd'
Note: removing empty section \references in file 'APComEX.Rd'
Note: removing empty section \source in file 'APComEX.Rd'
Note: removing empty section \references in file 'APComEX.Rd'
  APComEX                           text    html    latex   example chm
Note: removing empty section \source in file 'PPIEX.Rd'
Note: removing empty section \references in file 'PPIEX.Rd'
Note: removing empty section \source in file 'PPIEX.Rd'
Note: removing empty section \references in file 'PPIEX.Rd'
  PPIEX                             text    html    latex   example chm
Note: removing empty section \details in file 'TSNMatrix.Rd'
Note: removing empty section \details in file 'TSNMatrix.Rd'
  TSNMatrix                         text    html    latex   example chm
  applyDeformationError             text    html    latex   example chm
  applyFNErrors                     text    html    latex   example chm
  applyFPErrors                     text    html    latex   example chm
  applyStickyError                  text    html    latex   example chm
Note: removing empty section \details in file 'compIndep.Rd'
Note: removing empty section \details in file 'compIndep.Rd'
  compIndep                         text    html    latex   example chm
  filteredProt                      text    html    latex   example chm
Note: removing empty section \source in file 'fullSimEX.Rd'
Note: removing empty section \references in file 'fullSimEX.Rd'
Note: removing empty section \source in file 'fullSimEX.Rd'
Note: removing empty section \references in file 'fullSimEX.Rd'
  fullSimEX                         text    html    latex   example chm
Note: removing empty section \source in file 'missedProtEX.Rd'
Note: removing empty section \references in file 'missedProtEX.Rd'
Note: removing empty section \source in file 'missedProtEX.Rd'
Note: removing empty section \references in file 'missedProtEX.Rd'
  missedProtEX                      text    html    latex   example chm
Note: removing empty section \source in file 'missedProtHMSPCI.Rd'
Note: removing empty section \details in file 'missedProtHMSPCI.Rd'
Note: removing empty section \references in file 'missedProtHMSPCI.Rd'
Note: removing empty section \source in file 'missedProtHMSPCI.Rd'
Note: removing empty section \details in file 'missedProtHMSPCI.Rd'
Note: removing empty section \references in file 'missedProtHMSPCI.Rd'
  missedProtHMSPCI                  text    html    latex   example chm
  recordSticky                      text    html    latex   example chm
  runAPComplex                      text    html    latex   example chm
  runCompIndep                      text    html    latex   example chm
Note: removing empty section \source in file 'runSimEX.Rd'
Note: removing empty section \references in file 'runSimEX.Rd'
Note: removing empty section \source in file 'runSimEX.Rd'
Note: removing empty section \references in file 'runSimEX.Rd'
  runSimEX                          text    html    latex   example chm
  runSimulators                     text    html    latex   example chm
Note: removing empty section \source in file 'simEX.Rd'
Note: removing empty section \references in file 'simEX.Rd'
Note: removing empty section \source in file 'simEX.Rd'
Note: removing empty section \references in file 'simEX.Rd'
  simEX                             text    html    latex   example chm
  simulator                         text    html    latex   example chm
  simulatorD                        text    html    latex   example chm
  simulatorS                        text    html    latex   example chm
Note: removing empty section \source in file 'vBaits.Rd'
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  vBaits                            text    html    latex   example chm
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  vBaitsEX                          text    html    latex   example chm
Note: removing empty section \source in file 'vDeformEX.Rd'
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  vDeformEX                         text    html    latex   example chm
  vDeformed                         text    html    latex   example chm
Note: removing empty section \source in file 'vDeformedEX.Rd'
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  vDeformedEX                       text    html    latex   example chm
Note: removing empty section \source in file 'vStickyEX.Rd'
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Note: removing empty section \source in file 'vStickyEX.Rd'
Note: removing empty section \details in file 'vStickyEX.Rd'
Note: removing empty section \references in file 'vStickyEX.Rd'
  vStickyEX                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\simulatorAPMS\chm\simulatorAPMS.chm





Compile time: 0 minutes, 1 second

28	Topics

78	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\simulatorAPMS\chm\simulatorAPMS.chm, 36,516 bytes

Compression decreased file by 29,710 bytes.

** building package indices ...
** MD5 sums
* DONE (simulatorAPMS)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'simulatorAPMS_1.16.0.tar.gz'