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Package 146/319HostnameOS / ArchBUILDCHECKBUILD BIN
hexbin 1.18.0
Nicholas Lewin-Koh
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/hexbin
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: hexbin
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes hexbin_1.18.0.tar.gz
StartedAt: 2009-10-20 17:52:53 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:54:05 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 71.7 seconds
RetCode: 0
Status: OK
CheckDir: hexbin.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/hexbin.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixcolors: no visible global function definition for ‘coords’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
  Running ‘hdiffplot.R’
  Comparing ‘hdiffplot.Rout’ to ‘hdiffplot.Rout.save’ ...9c9
<   Buggy version of Kinderman-Ramage generator used
---
>   Buggy version of Kinderman-Ramage generator used.
24,25c24,25
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
<   ..@ ycm   : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
>   ..@ ycm   : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
<   ..@ ybnds : num [1:2] -4.23 4.7
---
>   ..@ ybnds : num [1:2] -4.23  4.70
109,110c109,110
<   ..@ xcm   : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
<   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
>   ..@ xcm   : num [1:535]  0.370  1.338  0.721 -1.846 -0.965 ...
>   ..@ ycm   : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
<   ..@ ybnds : num [1:2] -4.23 4.7
---
>   ..@ ybnds : num [1:2] -4.23  4.70
  Running ‘hray.R’
  Running ‘large.R’
  Running ‘viewp-ex.R’
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

hexbin.Rcheck/00install.out:

* Installing *source* package ‘hexbin’ ...
** libs
** arch - i386
gfortran -arch i386   -fPIC  -g -O2 -c hbin.f -o hbin.o
gfortran -arch i386   -fPIC  -g -O2 -c hcell.f -o hcell.o
gfortran -arch i386   -fPIC  -g -O2 -c herode.f -o herode.o
gfortran -arch i386   -fPIC  -g -O2 -c hsm.f -o hsm.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gfortran -arch ppc   -fPIC  -g -O2 -c hbin.f -o hbin.o
gfortran -arch ppc   -fPIC  -g -O2 -c hcell.f -o hcell.o
gfortran -arch ppc   -fPIC  -g -O2 -c herode.f -o herode.o
gfortran -arch ppc   -fPIC  -g -O2 -c hsm.f -o hsm.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "hexbin"
Creating a new generic function for "summary" in "hexbin"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'hexbin'
     Formats: text html latex example 
Note: removing empty section \references in file 'NHANES.Rd'
  NHANES                            text    html    latex   example
  colramp                           text    html    latex   example
  erode.hexbin                      text    html    latex   example
  getHMedian                        text    html    latex   example
  gplot.hexbin                      text    html    latex   example
  grid.hexagons                     text    html    latex   example
  grid.hexlegend                    text    html    latex   example
  hboxplot                          text    html    latex   example
  hcell2xy                          text    html    latex   example
  hcell2xyInt                       text    html    latex   example
  hdiffplot                         text    html    latex   example
  hexGraphPaper                     text    html    latex   example
Note: removing empty section \examples in file 'hexList.Rd'
  hexList                           text    html    latex
  hexMA.loess                       text    html    latex   example
  hexTapply                         text    html    latex   example
  hexVP-class                       text    html    latex   example
Note: removing empty section \examples in file 'hexVP.abline.Rd'
  hexVP.abline                      text    html    latex
Note: removing empty section \details in file 'hexViewport.Rd'
  hexViewport                       text    html    latex   example
  hexbin                            text    html    latex   example
  hexbinplot                        text    html    latex   example
  hexplom                           text    html    latex   example
  hexpolygon                        text    html    latex   example
  hsmooth-methods                   text    html    latex
  inout.hex                         text    html    latex
  list2hexList                      text    html    latex
  old-classes                       text    html    latex
  optShape                          text    html    latex   example
  panel.hexboxplot                  text    html    latex   example
Note: removing empty section \details in file 'panel.hexgrid.Rd'
Note: removing empty section \examples in file 'panel.hexgrid.Rd'
  panel.hexgrid                     text    html    latex
Note: removing empty section \details in file 'panel.hexloess.Rd'
Note: removing empty section \examples in file 'panel.hexloess.Rd'
  panel.hexloess                    text    html    latex
  plotMAhex                         text    html    latex   example
  pushHexport                       text    html    latex
  smooth.hexbin                     text    html    latex   example
** building package indices ...
* DONE (hexbin)