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Package 137/319HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.22.5
Robert Gentleman
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/graph
Last Changed Rev: 41979 / Revision: 42512
Last Changed Date: 2009-09-27 05:28:20 -0700 (Sun, 27 Sep 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: graph
Version: 1.22.5
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes graph_1.22.5.tar.gz
StartedAt: 2009-10-20 17:16:38 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:17:37 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 58.9 seconds
RetCode: 0
Status: WARNINGS
CheckDir: graph.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/graph.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.22.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'src' contains:
  BioC_graph.dll
These are unlikely file names for src files.
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
inEdges,character-graphNEL: no visible binding for global variable
  'from'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.4-bioc/meat/graph.Rcheck/00check.log
for details

graph.Rcheck/00install.out:

* Installing *source* package 'graph' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c graph.c -o graph.o
gcc -shared -s -o graph.dll tmp.def graph.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
mv graph.dll BioC_graph.dll
  ... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'graph'
     Formats: text html latex example chm 
  DFS                               text    html    latex   example chm
  IMCA                              text    html    latex   example chm
  MAPKsig                           text    html    latex   example chm
  acc-methods                       text    html    latex   example chm
  addEdge                           text    html    latex   example chm
  addNode                           text    html    latex   example chm
  adj-methods                       text    html    latex   example chm
  apoptosisGraph                    text    html    latex   example chm
  attrData-class                    text    html    latex   example chm
  attrDataItem-methods              text    html    latex           chm
  attrDefaults-methods              text    html    latex           chm
  aveNumEdges                       text    html    latex   example chm
  biocRepos                         text    html    latex   example chm
  boundary                          text    html    latex   example chm
  buildRepDepGraph                  text    html    latex   example chm
  calcProb                          text    html    latex   example chm
  calcSumProb                       text    html    latex   example chm
  clearNode                         text    html    latex   example chm
  clusterGraph-class                text    html    latex   example chm
  clusteringCoefficient-methods     text    html    latex   example chm
  combineNodes                      text    html    latex   example chm
  distGraph-class                   text    html    latex   example chm
  duplicatedEdges                   text    html    latex   example chm
  edgeData-methods                  text    html    latex           chm
  edgeDataDefaults-methods          text    html    latex           chm
  edgeMatrix                        text    html    latex   example chm
  edgeWeights                       text    html    latex   example chm
  fromGXL-methods                   text    html    latex   example chm
  graph-class                       text    html    latex   example chm
  graph2SparseM                     text    html    latex   example chm
  graphAM-class                     text    html    latex   example chm
  graphExamples                     text    html    latex   example chm
  graphNEL-class                    text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'graphRendering.Rd'
Note: removing empty section \details in file 'graphRendering.Rd'
Note: removing empty section \examples in file 'graphRendering.Rd'
Note: removing empty section \seealso in file 'graphRendering.Rd'
Note: ignoring empty \keyword entries in file 'graphRendering.Rd'
Note: removing empty section \details in file 'graphRendering.Rd'
Note: removing empty section \examples in file 'graphRendering.Rd'
Note: removing empty section \seealso in file 'graphRendering.Rd'
  graphRendering                    text    html    latex           chm
  inEdges                           text    html    latex   example chm
  internal                          text    html    latex           chm
  isAdjacent-methods                text    html    latex           chm
  isDirected-methods                text    html    latex           chm
Note: ignoring empty \keyword entries in file 'leaves.Rd'
Note: ignoring empty \keyword entries in file 'leaves.Rd'
  leaves                            text    html    latex   example chm
  listEdges                         text    html    latex   example chm
  matrix2Graph                      text    html    latex   example chm
  mostEdges                         text    html    latex   example chm
  multigraph                        text    html    latex           chm
  nodeData-methods                  text    html    latex           chm
  nodeDataDefaults-methods          text    html    latex           chm
  numNoEdges                        text    html    latex   example chm
  pancrCaIni                        text    html    latex   example chm
  randomEGraph                      text    html    latex   example chm
  randomGraph                       text    html    latex   example chm
  randomNodeGraph                   text    html    latex   example chm
  removeEdge                        text    html    latex   example chm
  removeNode                        text    html    latex   example chm
  renderInfo-class                  text    html    latex   example chm
  reverseEdgeDirections             text    html    latex   example chm
  settings                          text    html    latex           chm
  simpleEdge-class                  text    html    latex   example chm
  standardLabeling                  text    html    latex   example chm
  subGraph                          text    html    latex   example chm
  toDotR-methods                    text    html    latex   example chm
  ugraph                            text    html    latex   example chm
  validGraph                        text    html    latex   example chm
  write.tlp                         text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\GRAPH~1.RCH\00_PKG~1\graph\chm\graph.chm


Compile time: 0 minutes, 1 second
63	Topics
485	Local links
5	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\GRAPH~1.RCH\00_PKG~1\graph\chm\graph.chm, 97,150 bytes
Compression decreased file by 188,152 bytes.
** building package indices ...
** MD5 sums
* DONE (graph)