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Package 2/319HostnameOS / ArchBUILDCHECKBUILD BIN
aCGH 1.18.1
Jane Fridlyand
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/aCGH
Last Changed Rev: 42112 / Revision: 42512
Last Changed Date: 2009-10-01 16:44:04 -0700 (Thu, 01 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: aCGH
Version: 1.18.1
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build aCGH
StartedAt: 2009-10-20 14:22:21 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:23:35 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 74.2 seconds
RetCode: 0
Status: OK
PackageFile: aCGH_1.18.1.tar.gz
PackageFileSize: 6.143 MiB

Command output

* checking for file 'aCGH/DESCRIPTION' ... OK
* preparing 'aCGH':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package 'aCGH' ...
** libs
  making DLL ...
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -g3       -O2 -Wall  -c hmm.cpp -o hmm.o
g++ -shared -s -o aCGH.dll tmp.def hmm.o -lm -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: splines
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'aCGH'
     Formats: text html latex example chm 
  aCGH                              text    html    latex   example chm
  aCGH.process                      text    html    latex   example chm
  aCGH.read.Sprocs                  text    html    latex   example chm
  aCGH.test                         text    html    latex           chm
  clusterGenome                     text    html    latex   example chm
  colorectal                        text    html    latex   example chm
  computeSD.func                    text    html    latex           chm
  fga.func                          text    html    latex   example chm
  find.genomic.events               text    html    latex           chm
  find.hmm.states                   text    html    latex   example chm
  findAber.func                     text    html    latex           chm
  findAmplif.func                   text    html    latex           chm
  findOutliers.func                 text    html    latex           chm
  findTrans.func                    text    html    latex           chm
  gainLoss                          text    html    latex   example chm
  heatmap                           text    html    latex   example chm
  human.chrom.info.Jul03            text    html    latex           chm
  human.chrom.info.May04            text    html    latex           chm
  impute.HMM                        text    html    latex   example chm
  impute.lowess                     text    html    latex   example chm
  mergeFunc                         text    html    latex           chm
  mergeLevels                       text    html    latex   example chm
  plotFreqStat                      text    html    latex   example chm
  plotGenome                        text    html    latex   example chm
  plotHmmStates                     text    html    latex   example chm
  plotSummaryProfile                text    html    latex   example chm
  states.hmm.func                   text    html    latex           chm
  summarize.clones                  text    html    latex   example chm
  threshold.func                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\aCGH\chm\aCGH.chm





Compile time: 0 minutes, 2 seconds

30	Topics

262	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\aCGH\chm\aCGH.chm, 73,725 bytes

Compression decreased file by 88,886 bytes.

** building package indices ...
** MD5 sums
* DONE (aCGH)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'aCGH_1.18.1.tar.gz'