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Package 268/319HostnameOS / ArchBUILDCHECKBUILD BIN
Rtreemix 1.6.0
Jasmina Bogojeska
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/Rtreemix
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: Rtreemix
Version: 1.6.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD build Rtreemix
StartedAt: 2009-10-20 15:17:16 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:18:35 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 79.5 seconds
RetCode: 0
Status: OK
PackageFile: Rtreemix_1.6.0.tar.gz
PackageFileSize: 623.4 KiB

Command output

* checking for file 'Rtreemix/DESCRIPTION' ... OK
* preparing 'Rtreemix':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* Installing *source* package 'Rtreemix' ...
** libs
  making DLL ...
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c Rtreemix.cc -o Rtreemix.o
Rtreemix.cc: In function 'SEXPREC* R_fit(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
Rtreemix.cc:594: warning: value computed is not used
Rtreemix.cc: In function 'SEXPREC* R_fit1(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
Rtreemix.cc:936: warning: value computed is not used
Rtreemix.cc: In function 'SEXPREC* R_fit0(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
Rtreemix.cc:1279: warning: value computed is not used
Rtreemix.cc: In function 'SEXPREC* R_bootstrap(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
Rtreemix.cc:1726: warning: value computed is not used
Rtreemix.cc: In function 'SEXPREC* R_random(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
Rtreemix.cc:2627: warning: value computed is not used
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c WrapGraph.cc -o WrapGraph.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c cfunctions.cc -o cfunctions.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c kmeans.cc -o kmeans.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c max_weight_branch.cc -o max_weight_branch.o
max_weight_branch.cc: In function 'void DOT(replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, char*)':
max_weight_branch.cc:97: warning: value computed is not used
max_weight_branch.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > max_weight_subgraph_indeg_le_1(replaceleda::graph&)':
max_weight_branch.cc:142: warning: value computed is not used
max_weight_branch.cc: In function 'void contract_all_cycles(replaceleda::graph&, int, replaceleda::array<replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > >, replaceleda::GRAPH<replaceleda::RefCountPtr<replaceleda::Node>, replaceleda::RefCountPtr<replaceleda::Edge> >&)':
max_weight_branch.cc:341: warning: value computed is not used
max_weight_branch.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > MAX_WEIGHT_BRANCHING(replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, replaceleda::edge_array<double>&)':
max_weight_branch.cc:432: warning: value computed is not used
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c mtree.cc -o mtree.o
mtree.cc: In function 'void mgraph_init(replaceleda::array<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, replaceleda::graph&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >&, replaceleda::edge_array<double>&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&)':
mtree.cc:181: warning: value computed is not used
mtree.cc:182: warning: value computed is not used
mtree.cc: In function 'replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> > mtree_bfs(replaceleda::graph&, replaceleda::node&)':
mtree.cc:268: warning: value computed is not used
mtree.cc: In function 'double mtree_like(replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&)':
mtree.cc:317: warning: value computed is not used
mtree.cc: In function 'replaceleda::integer_vector mtree_draw(int, replaceleda::graph&, replaceleda::node&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Node>, int>&)':
mtree.cc:440: warning: value computed is not used
mtree.cc: In function 'void mtree_directed(replaceleda::graph&, replaceleda::node&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&, double, double)':
mtree.cc:780: warning: value computed is not used
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c mtreemix.cc -o mtreemix.o
mtreemix.cc: In function 'double mtree_state(replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, int>&, replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map<int, replaceleda::RefCountPtr<replaceleda::Node> >&, replaceleda::map<replaceleda::RefCountPtr<replaceleda::Edge>, double>&)':
mtreemix.cc:1031: warning: value computed is not used
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O2 -Wall  -c replaceleda.cc -o replaceleda.o
replaceleda.cc: In function 'bool replaceleda::Is_Acyclic(replaceleda::graph&, replaceleda::list<replaceleda::RefCountPtr<replaceleda::Edge> >&)':
replaceleda.cc:78: warning: value computed is not used
replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::graph&, replaceleda::graph&)':
replaceleda.cc:125: warning: value computed is not used
replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::GRAPH<replaceleda::RefCountPtr<replaceleda::Node>, replaceleda::RefCountPtr<replaceleda::Edge> >&, replaceleda::graph&)':
replaceleda.cc:146: warning: value computed is not used
replaceleda.cc: In function 'std::ostream& replaceleda::operator<<(std::ostream&, replaceleda::graph&)':
replaceleda.cc:349: warning: value computed is not used
replaceleda.cc: In function 'void replaceleda::printGraph(replaceleda::graph&, replaceleda::edge_array<double>&)':
replaceleda.cc:370: warning: value computed is not used
g++ -shared -s -o Rtreemix.dll tmp.def Rtreemix.o WrapGraph.o cfunctions.o kmeans.o max_weight_branch.o mtree.o mtreemix.o replaceleda.o -lm -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "print" in "Rtreemix"
** help
*** installing help indices
 >>> Building/Updating help pages for package 'Rtreemix'
     Formats: text html latex example chm 
  L1.dist                           text    html    latex   example chm
  L2.norm                           text    html    latex   example chm
  Pval.dist                         text    html    latex   example chm
  RtreemixData-class                text    html    latex   example chm
  RtreemixGPS-class                 text    html    latex   example chm
  RtreemixModel-class               text    html    latex   example chm
  RtreemixSim-class                 text    html    latex   example chm
  RtreemixStats-class               text    html    latex   example chm
  bootstrap-methods                 text    html    latex   example chm
  comp.models                       text    html    latex   example chm
  comp.trees                        text    html    latex   example chm
  confIntGPS-methods                text    html    latex   example chm
  distribution-methods              text    html    latex   example chm
  fit-methods                       text    html    latex   example chm
  generate-methods                  text    html    latex   example chm
  get.tree.levels                   text    html    latex   example chm
  gps-methods                       text    html    latex   example chm
  hiv.data                          text    html    latex   example chm
  kullback.leibler                  text    html    latex   example chm
  likelihoods-methods               text    html    latex   example chm
  plot-methods                      text    html    latex   example chm
  sim-methods                       text    html    latex   example chm
  stability.sim                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\meat\Rtreemix\chm\Rtreemix.chm





Compile time: 0 minutes, 2 seconds

24	Topics

266	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\meat\Rtreemix\chm\Rtreemix.chm, 61,983 bytes

Compression decreased file by 98,305 bytes.

** building package indices ...
** MD5 sums
* DONE (Rtreemix)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Rtreemix_1.6.0.tar.gz'