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Package 206/319HostnameOS / ArchBUILDCHECKBUILD BIN
OCplus 1.18.0
Alexander Ploner
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/OCplus
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: OCplus
Version: 1.18.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes OCplus_1.18.0.tar.gz
StartedAt: 2009-10-20 17:12:14 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:13:08 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 54.5 seconds
RetCode: 0
Status: OK
CheckDir: OCplus.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/OCplus.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OCplus/DESCRIPTION' ... OK
* this is package 'OCplus' version '1.18.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'OCplus' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.FDR.result':
  plot.FDR.result

S3 methods shown with full name in documentation object 'plot.fdr1d.result':
  plot.fdr1d.result

S3 methods shown with full name in documentation object 'plot.fdr2d.result':
  plot.fdr2d.result

S3 methods shown with full name in documentation object 'summary.fdr.result':
  summary.fdr.result

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

OCplus.Rcheck/00install.out:

* Installing *source* package 'OCplus' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'OCplus'
     Formats: text html latex example 
  DrawContourlines                  text    html    latex
  EOC                               text    html    latex   example
  FDR                               text    html    latex   example
  MAsim.smyth                       text    html    latex   example
  OCshow                            text    html    latex   example
  TOC                               text    html    latex   example
  Undocumented                      text    html    latex
  average.fdr                       text    html    latex   example
  fdr1d                             text    html    latex   example
  fdr2d                             text    html    latex   example
  plot.FDR.result                   text    html    latex   example
  plot.fdr1d.result                 text    html    latex   example
  plot.fdr2d.result                 text    html    latex   example
  samplesize                        text    html    latex   example
  smooth1d                          text    html    latex   example
  summary.fdr.result                text    html    latex   example
  tMixture                          text    html    latex   example
Note: removing empty section \examples in file 'tstatistics.Rd'
  tstatistics                       text    html    latex
** building package indices ...
* DONE (OCplus)