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Package 140/319HostnameOS / ArchBUILDCHECKBUILD BIN
GSEABase 1.6.1
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GSEABase
Last Changed Rev: 40271 / Revision: 42512
Last Changed Date: 2009-06-22 16:19:38 -0700 (Mon, 22 Jun 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GSEABase
Version: 1.6.1
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes GSEABase_1.6.1.tar.gz
StartedAt: 2009-10-20 17:50:44 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:52:54 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 130.7 seconds
RetCode: 0
Status: OK
CheckDir: GSEABase.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/GSEABase.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49419)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'GSEABase/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSEABase' version '1.6.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GSEABase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GSEABase.Rcheck/00install.out:

* Installing *source* package ‘GSEABase’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
 >>> Building/Updating help pages for package 'GSEABase'
     Formats: text html latex example 
  CollectionType-class              text    html    latex   example
  CollectionType-constructors       text    html    latex   example
  GSEABase-package                  text    html    latex   example
  GeneColorSet-class                text    html    latex   example
  GeneColorSet-methods              text    html    latex
  GeneIdentifierType-class          text    html    latex   example
  GeneIdentifierType-constructors   text    html    latex   example
  GeneSet-class                     text    html    latex   example
  GeneSet-methods                   text    html    latex   example
  GeneSetCollection-class           text    html    latex   example
  GeneSetCollection-methods         text    html    latex   example
  OBOCollection-class               text    html    latex   example
  details-methods                   text    html    latex
  getOBOCollection                  text    html    latex   example
  getObjects                        text    html    latex   example
  goSlim-methods                    text    html    latex   example
  incidence-methods                 text    html    latex   example
  mapIdentifiers-methods            text    html    latex
** building package indices ...
* DONE (GSEABase)