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Package 127/319HostnameOS / ArchBUILDCHECKBUILD BIN
GGBase 3.4.0
Vince Carey
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GGBase
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GGBase
Version: 3.4.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes GGBase_3.4.0.tar.gz
StartedAt: 2009-10-20 16:26:46 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 16:29:10 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 143.6 seconds
RetCode: 0
Status: OK
CheckDir: GGBase.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/GGBase.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GGBase/DESCRIPTION' ... OK
* this is package 'GGBase' version '3.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GGBase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
snpLocs.Hs,chrnum-missing: no visible binding for global variable
  'hsSnpLocs'
snpLocs.Hs,chrnum-rsid: no visible binding for global variable
  'hsSnpLocs'
snpLocs.Hs,missing-rsid: no visible binding for global variable
  'hsSnpLocs'
snpLocs.Hs,rsid-ANY: no visible binding for global variable 'hsSnpLocs'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GGBase.Rcheck/00install.out:

* Installing *source* package 'GGBase' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: annotate
Loading required package: graph
Loading required package: survival
Loading required package: splines
Loading required package: DBI
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GGBase'
     Formats: text html latex example 
  GGBase-package                    text    html    latex
  MAFfilter                         text    html    latex   example
  SessionInfo-class                 text    html    latex   example
  casting                           text    html    latex   example
  featureFilter                     text    html    latex   example
  gwSnpScreenResult-class           text    html    latex   example
  multiCisTestResult-class          text    html    latex   example
  plot_EvG-methods                  text    html    latex   example
  smlSet-class                      text    html    latex   example
  smlSummary                        text    html    latex   example
  snpLocs.Hs                        text    html    latex   example
  snpsNear                          text    html    latex   example
** building package indices ...
* DONE (GGBase)