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Package 126/319HostnameOS / ArchBUILDCHECKBUILD BIN
GEOquery 2.8.0
Sean Davis
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GEOquery
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GEOquery
Version: 2.8.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes GEOquery_2.8.0.tar.gz
StartedAt: 2009-10-20 17:10:22 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:11:39 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 76.4 seconds
RetCode: 0
Status: OK
CheckDir: GEOquery.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/GEOquery.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GEOquery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GEOquery' version '2.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GEOquery' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GEOquery.Rcheck/00install.out:

* Installing *source* package 'GEOquery' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: bitops
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GEOquery'
     Formats: text html latex example chm 
  GDS-class                         text    html    latex           chm
  GDS2MA                            text    html    latex   example chm
  GEOData-class                     text    html    latex           chm
  GEODataTable-class                text    html    latex           chm
  GPL-class                         text    html    latex           chm
  GSE-class                         text    html    latex           chm
  GSM-class                         text    html    latex           chm
Note: removing empty section \usage in file 'dataTable.Rd'
Note: removing empty section \details in file 'dataTable.Rd'
Note: removing empty section \arguments in file 'dataTable.Rd'
Note: removing empty section \usage in file 'dataTable.Rd'
Note: removing empty section \details in file 'dataTable.Rd'
Note: removing empty section \arguments in file 'dataTable.Rd'
  dataTable                         text    html    latex           chm
  getGEO                            text    html    latex   example chm
  getGEOSuppFiles                   text    html    latex   example chm
  getGEOfile                        text    html    latex   example chm
  gunzip                            text    html    latex           chm
  parseGEO                          text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\GEOQUE~1.RCH\00_PKG~1\GEOquery\chm\GEOquery.chm


Compile time: 0 minutes, 0 seconds
14	Topics
65	Local links
1	Internet link
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\GEOQUE~1.RCH\00_PKG~1\GEOquery\chm\GEOquery.chm, 32,297 bytes
Compression decreased file by 15,891 bytes.
** building package indices ...
** MD5 sums
* DONE (GEOquery)