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Package 41/319HostnameOS / ArchBUILDCHECKBUILD BIN
Biobase 2.4.1
Biocore Team c/o BioC user list
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/Biobase
Last Changed Rev: 39232 / Revision: 42512
Last Changed Date: 2009-04-29 16:01:47 -0700 (Wed, 29 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: Biobase
Version: 2.4.1
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD build Biobase
StartedAt: 2009-10-20 14:58:04 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 14:58:50 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 46.5 seconds
RetCode: 0
Status: OK
PackageFile: Biobase_2.4.1.tar.gz
PackageFileSize: 1.87 MiB

Command output

* checking for file 'Biobase/DESCRIPTION' ... OK
* preparing 'Biobase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package ‘Biobase’ ...
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c Rinit.c -o Rinit.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c anyMissing.c -o anyMissing.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c envir.c -o envir.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c matchpt.c -o matchpt.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c rowMedians.c -o rowMedians.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -c sublist_extract.c -o sublist_extract.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c Rinit.c -o Rinit.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c anyMissing.c -o anyMissing.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c envir.c -o envir.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c matchpt.c -o matchpt.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c rowMedians.c -o rowMedians.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c sublist_extract.c -o sublist_extract.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'Biobase'
     Formats: text html latex example 
  Aggregate                         text    html    latex   example
  Biobase-package                   text    html    latex
  ScalarObject-class                text    html    latex   example
  abstract                          text    html    latex
  addVig2Menu                       text    html    latex   example
  annotatedDataFrameFrom-methods    text    html    latex
  annotation                        text    html    latex
  anyMissing                        text    html    latex   example
  assayData                         text    html    latex
  biocReposList                     text    html    latex   example
  cache                             text    html    latex   example
  channel                           text    html    latex   example
  channelNames                      text    html    latex   example
  class.AnnotatedDataFrame          text    html    latex   example
  class.AssayData                   text    html    latex
  class.ExpressionSet               text    html    latex   example
  class.MIAME                       text    html    latex
  class.MultiSet                    text    html    latex   example
  class.NChannelSet                 text    html    latex   example
  class.SnpSet                      text    html    latex
  class.Versioned                   text    html    latex   example
  class.VersionedBiobase            text    html    latex   example
  class.Versions                    text    html    latex   example
  class.VersionsNull                text    html    latex   example
  class.aggregator                  text    html    latex
  class.characterORmiame            text    html    latex
  class.container                   text    html    latex   example
  class.eSet                        text    html    latex   example
  classVersion                      text    html    latex   example
  combine                           text    html    latex   example
  contents                          text    html    latex   example
  copyEnv                           text    html    latex   example
  copySubstitute                    text    html    latex   example
  createPackage                     text    html    latex   example
  data.aaMap                        text    html    latex   example
  data.geneData                     text    html    latex   example
  data.reporter                     text    html    latex   example
  data.sample.ExpressionSet         text    html    latex   example
  data.sample.MultiSet              text    html    latex   example
  defunct                           text    html    latex
  description                       text    html    latex
  dims                              text    html    latex
  dumpPackTxt                       text    html    latex   example
  esApply                           text    html    latex   example
  exprs                             text    html    latex
  featureData                       text    html    latex
  featureNames                      text    html    latex
  getPkgVigs                        text    html    latex   example
  internals                         text    html    latex
  isCurrent                         text    html    latex   example
  isUnique                          text    html    latex   example
  isVersioned                       text    html    latex   example
  lcSuffix                          text    html    latex   example
  listLen                           text    html    latex   example
  makeDataPackage                   text    html    latex   example
  matchpt                           text    html    latex   example
  multiassign                       text    html    latex   example
  note                              text    html    latex   example
  notes                             text    html    latex
  openPDF                           text    html    latex   example
  openVignette                      text    html    latex   example
  package.version                   text    html    latex   example
  phenoData                         text    html    latex
  read.AnnotatedDataFrame           text    html    latex   example
  read.MIAME                        text    html    latex   example
  readExpressionSet                 text    html    latex   example
  reverseSplit                      text    html    latex   example
  rowMedians                        text    html    latex   example
  rowQ                              text    html    latex   example
  selectChannels                    text    html    latex   example
  selectSome                        text    html    latex   example
  storageMode                       text    html    latex
  strbreak                          text    html    latex   example
  subListExtract                    text    html    latex   example
  testBioCConnection                text    html    latex   example
  updateObject                      text    html    latex   example
  updateOldESet                     text    html    latex   example
  userQuery                         text    html    latex
  validMsg                          text    html    latex   example
** building package indices ...
* DONE (Biobase)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Biobase_2.4.1.tar.gz'