made4 1.16.0
Aedin Culhane
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/made4 | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/made4.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'made4' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getdata: no visible binding for global variable 'intensities'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating made4-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating made4-manual.tex ... OK
* checking made4-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/made4.Rcheck
---------- Making package made4 ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
preparing package made4 for lazy loading
Loading required package: ade4
Attaching package: 'ade4'
The following object(s) are masked from package:base :
within
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'made4'
Formats: text html latex example chm
NCI60 text html latex example chm
Note: removing empty section \references in file 'array2ade4.Rd'
Note: removing empty section \references in file 'array2ade4.Rd'
array2ade4 text html latex example chm
bet.coinertia text html latex example chm
Note: removing empty section \value in file 'between.graph.Rd'
Note: removing empty section \note in file 'between.graph.Rd'
Note: removing empty section \value in file 'between.graph.Rd'
Note: removing empty section \note in file 'between.graph.Rd'
between.graph text html latex example chm
bga text html latex example chm
bga.jackknife text html latex example chm
bga.suppl text html latex example chm
Note: removing empty section \details in file 'checkfac.Rd'
Note: removing empty section \note in file 'checkfac.Rd'
Note: removing empty section \seealso in file 'checkfac.Rd'
Note: removing empty section \examples in file 'checkfac.Rd'
Note: removing empty section \details in file 'checkfac.Rd'
Note: removing empty section \note in file 'checkfac.Rd'
Note: removing empty section \seealso in file 'checkfac.Rd'
Note: removing empty section \examples in file 'checkfac.Rd'
checkfac text html latex chm
Note: removing empty section \seealso in file 'chime3D.Rd'
Note: removing empty section \examples in file 'chime3D.Rd'
Note: removing empty section \seealso in file 'chime3D.Rd'
Note: removing empty section \examples in file 'chime3D.Rd'
chime3D text html latex chm
Note: removing empty section \note in file 'cia.Rd'
Note: removing empty section \note in file 'cia.Rd'
cia text html latex example chm
Note: removing empty section \value in file 'commonMap.Rd'
Note: removing empty section \references in file 'commonMap.Rd'
Note: removing empty section \value in file 'commonMap.Rd'
Note: removing empty section \references in file 'commonMap.Rd'
commonMap text html latex example chm
comparelists text html latex example chm
Note: removing empty section \details in file 'do3d.Rd'
Note: removing empty section \note in file 'do3d.Rd'
Note: removing empty section \references in file 'do3d.Rd'
Note: removing empty section \details in file 'do3d.Rd'
Note: removing empty section \note in file 'do3d.Rd'
Note: removing empty section \references in file 'do3d.Rd'
do3d text html latex example chm
Note: removing empty section \examples in file 'dudi.rwcoa.Rd'
Note: removing empty section \examples in file 'dudi.rwcoa.Rd'
dudi.rwcoa text html latex chm
Note: removing empty section \examples in file 'forrwcoa.Rd'
Note: removing empty section \examples in file 'forrwcoa.Rd'
forrwcoa text html latex chm
Note: removing empty section \value in file 'genes.Rd'
Note: removing empty section \examples in file 'genes.Rd'
Note: removing empty section \value in file 'genes.Rd'
Note: removing empty section \examples in file 'genes.Rd'
genes text html latex chm
Note: removing empty section \references in file 'genes1d.Rd'
Note: removing empty section \references in file 'genes1d.Rd'
genes1d text html latex example chm
getcol text html latex example chm
Note: removing empty section \examples in file 'getdata.Rd'
Note: removing empty section \examples in file 'getdata.Rd'
getdata text html latex chm
Note: removing empty section \value in file 'graph1D.Rd'
Note: removing empty section \details in file 'graph1D.Rd'
Note: removing empty section \note in file 'graph1D.Rd'
Note: removing empty section \references in file 'graph1D.Rd'
Note: removing empty section \value in file 'graph1D.Rd'
Note: removing empty section \details in file 'graph1D.Rd'
Note: removing empty section \note in file 'graph1D.Rd'
Note: removing empty section \references in file 'graph1D.Rd'
graph1D text html latex example chm
heatplot text html latex example chm
Note: removing empty section \seealso in file 'html3D.Rd'
Note: removing empty section \seealso in file 'html3D.Rd'
html3D text html latex example chm
Note: removing empty section \seealso in file 'jmol3D.Rd'
Note: removing empty section \examples in file 'jmol3D.Rd'
Note: removing empty section \seealso in file 'jmol3D.Rd'
Note: removing empty section \examples in file 'jmol3D.Rd'
jmol3D text html latex chm
khan text html latex example chm
Note: removing empty section \references in file 'ord.Rd'
Note: removing empty section \references in file 'ord.Rd'
ord text html latex example chm
Note: removing empty section \value in file 'overview.Rd'
Note: removing empty section \note in file 'overview.Rd'
Note: removing empty section \references in file 'overview.Rd'
Note: removing empty section \value in file 'overview.Rd'
Note: removing empty section \note in file 'overview.Rd'
Note: removing empty section \references in file 'overview.Rd'
overview text html latex example chm
plotarrays text html latex example chm
plotgenes text html latex example chm
Note: removing empty section \value in file 'pretty.dend.Rd'
Note: removing empty section \note in file 'pretty.dend.Rd'
Note: removing empty section \references in file 'pretty.dend.Rd'
Note: removing empty section \value in file 'pretty.dend.Rd'
Note: removing empty section \note in file 'pretty.dend.Rd'
Note: removing empty section \references in file 'pretty.dend.Rd'
pretty.dend text html latex example chm
randomiser text html latex example chm
s.var text html latex example chm
Note: removing empty section \note in file 'sumstats.Rd'
Note: removing empty section \references in file 'sumstats.Rd'
Note: removing empty section \seealso in file 'sumstats.Rd'
Note: removing empty section \note in file 'sumstats.Rd'
Note: removing empty section \references in file 'sumstats.Rd'
Note: removing empty section \seealso in file 'sumstats.Rd'
sumstats text html latex example chm
suppl text html latex example chm
Note: removing empty section \note in file 'topgenes.Rd'
Note: removing empty section \references in file 'topgenes.Rd'
Note: removing empty section \note in file 'topgenes.Rd'
Note: removing empty section \references in file 'topgenes.Rd'
topgenes text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\made4.Rcheck\00_pkg_src\made4\chm\made4.chm
Compile time: 0 minutes, 0 seconds
35 Topics
170 Local links
20 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\made4.Rcheck\00_pkg_src\made4\chm\made4.chm, 83,684 bytes
Compression decreased file by 112,989 bytes.
adding MD5 sums
* DONE (made4)