gaga 1.2.0
David Rossell
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/gaga | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/gaga.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'gaga/DESCRIPTION' ... OK
* this is package 'gaga' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaga' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating gaga-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaga-manual.tex ... OK
* checking gaga-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/gaga.Rcheck
---------- Making package gaga ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making cseqdesma.d from cseqdesma.c
making cstat.d from cstat.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c cseqdesma.c -o cseqdesma.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.3-bioc/R/include -O3 -Wall -c cstat.c -o cstat.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include -i gaga_res.rc -o gaga_res.o
gcc -std=gnu99 -shared -s -o gaga.dll gaga.def cseqdesma.o cstat.o gaga_res.o -Le:/biocbld/bbs-2.3-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'gaga'
Formats: text html latex example chm
Note: removing empty section \examples in file 'checkfit.Rd'
Note: removing empty section \examples in file 'checkfit.Rd'
checkfit text html latex chm
classpred text html latex example chm
Note: removing empty section \examples in file 'dcgamma.Rd'
Note: removing empty section \examples in file 'dcgamma.Rd'
dcgamma text html latex chm
findgenes text html latex example chm
fitGG text html latex example chm
geneclus text html latex example chm
Note: removing empty section \examples in file 'getpar.Rd'
Note: removing empty section \examples in file 'getpar.Rd'
getpar text html latex chm
parest text html latex example chm
Note: removing empty section \examples in file 'posmeansGG.Rd'
Note: removing empty section \examples in file 'posmeansGG.Rd'
posmeansGG text html latex chm
Note: removing empty section \examples in file 'powclasspred.Rd'
Note: removing empty section \examples in file 'powclasspred.Rd'
powclasspred text html latex chm
Note: removing empty section \details in file 'print.gagaclus.Rd'
Note: removing empty section \details in file 'print.gagaclus.Rd'
print.gagaclus text html latex chm
print.gagafit text html latex chm
Note: removing empty section \details in file 'print.gagahyp.Rd'
Note: removing empty section \details in file 'print.gagahyp.Rd'
print.gagahyp text html latex chm
simGG text html latex example chm
Note: removing empty section \examples in file 'simnewsamples.Rd'
Note: removing empty section \examples in file 'simnewsamples.Rd'
simnewsamples text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\gaga.Rcheck\00_pkg_src\gaga\chm\gaga.chm
Compile time: 0 minutes, 0 seconds
16 Topics
64 Local links
15 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\gaga.Rcheck\00_pkg_src\gaga\chm\gaga.chm, 39,307 bytes
Compression decreased file by 31,784 bytes.
adding MD5 sums
* DONE (gaga)