Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 91/294HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.8.3
Nolwenn Le Meur
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/flowCore
Last Changed Rev: 38169 / Revision: 38965
Last Changed Date: 2009-03-24 17:53:21 -0700 (Tue, 24 Mar 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: flowCore
Version: 1.8.3
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes flowCore_1.8.3.tar.gz
StartedAt: 2009-04-18 18:45:12 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:48:14 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 182.2 seconds
RetCode: 0
Status: OK
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/flowCore.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.8.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating flowCore-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating flowCore-manual.tex ... OK
* checking flowCore-manual.tex using pdflatex ... OK

flowCore.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/flowCore.Rcheck


---------- Making package flowCore ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making biexponential.d from biexponential.c
making inPolygon.d from inPolygon.c
making inPolytope.d from inPolytope.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c biexponential.c -o biexponential.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c inPolygon.c -o inPolygon.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c inPolytope.c -o inPolytope.o
inPolytope.c: In function 'inPolytope':
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i flowCore_res.rc -o flowCore_res.o
gcc  -std=gnu99  -shared -s  -o flowCore.dll flowCore.def biexponential.o inPolygon.o inPolytope.o flowCore_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package flowCore for lazy loading
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: rpanel
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: ks
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'flowCore'
     Formats: text html latex example chm 
  EHtrans-class                     text    html    latex   example chm
  GvHD                              text    html    latex           chm
  Subset-methods                    text    html    latex   example chm
  actionItem-class                  text    html    latex   example chm
  arcsinhTransform                  text    html    latex   example chm
  asinht-class                      text    html    latex   example chm
  biexponentialTransform            text    html    latex   example chm
Note: removing empty section \seealso in file 'characterOrTransformation-class.Rd'
Note: removing empty section \seealso in file 'characterOrTransformation-class.Rd'
  characterOrTransformation-class   text    html    latex   example chm
  coerce                            text    html    latex   example chm
  compensateActionItem-class        text    html    latex   example chm
  compensateView-class              text    html    latex   example chm
  compensatedParameter-class        text    html    latex   example chm
  compensation-class                text    html    latex   example chm
  concreteFilter-class              text    html    latex           chm
  curv1Filter-class                 text    html    latex   example chm
  curv2Filter-class                 text    html    latex   example chm
  dg1polynomial-class               text    html    latex   example chm
  each_col-methods                  text    html    latex   example chm
  ellipsoidGate                     text    html    latex   example chm
  exponential-class                 text    html    latex   example chm
  expressionFilter-class            text    html    latex   example chm
  fcReference-class                 text    html    latex   example chm
  filter-and-methods                text    html    latex           chm
  filter-class                      text    html    latex           chm
  filter-in-methods                 text    html    latex           chm
  filter-methods                    text    html    latex   example chm
  filter-on-methods                 text    html    latex   example chm
  filterDetails-methods             text    html    latex           chm
  filterReference-class             text    html    latex           chm
  filterResult-class                text    html    latex   example chm
  filterResultList-class            text    html    latex   example chm
  filterSet-class                   text    html    latex   example chm
  filterSummary-class               text    html    latex   example chm
  filterSummaryList-class           text    html    latex   example chm
  flowFrame-class                   text    html    latex   example chm
  flowSet-class                     text    html    latex   example chm
  fsApply                           text    html    latex   example chm
  gateActionItem-class              text    html    latex   example chm
  gateView-class                    text    html    latex   example chm
  hyperlog-class                    text    html    latex   example chm
  identifier-methods                text    html    latex   example chm
  invsplitscale-class               text    html    latex   example chm
  keyword-methods                   text    html    latex   example chm
  kmeansFilter                      text    html    latex   example chm
  linearTransform                   text    html    latex   example chm
  lnTransform                       text    html    latex   example chm
  logTransform                      text    html    latex   example chm
  logarithm-class                   text    html    latex   example chm
  logicalFilterResult-class         text    html    latex   example chm
  logicleTransform                  text    html    latex   example chm
  manyFilterResult-class            text    html    latex   example chm
  multipleFilterResult-class        text    html    latex   example chm
  norm2Filter-class                 text    html    latex   example chm
  normalization-class               text    html    latex           chm
  normalizeActionItem-class         text    html    latex   example chm
  normalizeView-class               text    html    latex   example chm
  parameterFilter-class             text    html    latex           chm
  parameterTransform-class          text    html    latex           chm
Note: removing empty section \seealso in file 'parameters-class.Rd'
Note: removing empty section \seealso in file 'parameters-class.Rd'
  parameters-class                  text    html    latex   example chm
  parameters-methods                text    html    latex   example chm
  polygonGate                       text    html    latex   example chm
Note: removing empty section \examples in file 'polytopeGate.Rd'
Note: removing empty section \examples in file 'polytopeGate.Rd'
  polytopeGate                      text    html    latex           chm
  quadGate                          text    html    latex   example chm
  quadratic-class                   text    html    latex   example chm
  quadraticTransform                text    html    latex   example chm
  randomFilterResult-class          text    html    latex           chm
  ratio-class                       text    html    latex   example chm
  read.FCS                          text    html    latex   example chm
  read.FCSheader                    text    html    latex   example chm
  read.flowSet                      text    html    latex   example chm
  rectangleGate                     text    html    latex   example chm
  sampleFilter-class                text    html    latex   example chm
  scaleTransform                    text    html    latex   example chm
  setOperationFilter-class          text    html    latex           chm
Note: removing empty section \seealso in file 'singleParameterTransform-class.Rd'
Note: removing empty section \seealso in file 'singleParameterTransform-class.Rd'
  singleParameterTransform-class    text    html    latex   example chm
  sinht-class                       text    html    latex   example chm
  spillover-flowSet                 text    html    latex           chm
  split-methods                     text    html    latex   example chm
  splitScaleTransform               text    html    latex   example chm
  splitscale-class                  text    html    latex   example chm
  squareroot-class                  text    html    latex   example chm
  summarizeFilter-methods           text    html    latex           chm
  timeFilter-class                  text    html    latex   example chm
  transform-class                   text    html    latex   example chm
  transformActionItem-class         text    html    latex   example chm
  transformFilter-class             text    html    latex   example chm
  transformList-class               text    html    latex   example chm
  transformMap-class                text    html    latex   example chm
Note: removing empty section \seealso in file 'transformReference-class.Rd'
Note: removing empty section \seealso in file 'transformReference-class.Rd'
  transformReference-class          text    html    latex   example chm
  transformView-class               text    html    latex   example chm
Note: removing empty section \seealso in file 'transformation-class.Rd'
Note: removing empty section \seealso in file 'transformation-class.Rd'
  transformation-class              text    html    latex   example chm
  truncateTransform                 text    html    latex   example chm
  unitytransform-class              text    html    latex   example chm
  view-class                        text    html    latex   example chm
  workFlow-class                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\flowCore.Rcheck\00_pkg_src\flowCore\chm\flowCore.chm


Compile time: 0 minutes, 1 second
96	Topics
1,484	Local links
2	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\flowCore.Rcheck\00_pkg_src\flowCore\chm\flowCore.chm, 176,703 bytes
Compression decreased file by 482,449 bytes.
  adding MD5 sums

* DONE (flowCore)