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Package 55/294HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.6.0
Florian Hahne
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/cellHTS2
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  WARNINGS  OK 
Package: cellHTS2
Version: 2.6.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes cellHTS2_2.6.0.tar.gz
StartedAt: 2009-04-18 16:36:24 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:39:38 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 193.9 seconds
RetCode: 0
Status: WARNINGS
CheckDir: cellHTS2.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/cellHTS2.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ASCII
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... WARNING
Found the following significant warnings:
  WARNING: found \itemize inside \value in file 'configure.Rd'
See '/Users/biocbuild/bbs-2.3-bioc/meat/cellHTS2.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Data<-,cellHTS-array: no visible global function definition for
  'channelNames<-'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating cellHTS2-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating cellHTS2-manual.tex ... OK
* checking cellHTS2-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.3-bioc/meat/cellHTS2.Rcheck/00check.log
for details

cellHTS2.Rcheck/00install.out:

* Installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: prada
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 0.5-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: genefilter
Loading required package: survival
Loading required package: splines

Attaching package: 'survival'


	The following object(s) are masked from package:robustbase :

	 heart 

Loading required package: splots
Loading required package: vsn
Loading required package: lattice
Loading required package: affy
Loading required package: limma
** help
 >>> Building/Updating help pages for package 'cellHTS2'
     Formats: text html latex example 
  Bscore                            text    html    latex   example
  Data                              text    html    latex
  ROC-class                         text    html    latex   example
  ROC                               text    html    latex   example
  annotate                          text    html    latex   example
  batch                             text    html    latex
  bdgpbiomart                       text    html    latex   example
  cellHTS-class                     text    html    latex   example
  cellHTS2                          text    html    latex
  configurationAsScreenPlot         text    html    latex   example
WARNING: found \itemize inside \value in file 'configure.Rd'
  configure                         text    html    latex   example
  convertOldCellHTS                 text    html    latex   example
  convertWellCoordinates            text    html    latex   example
  data-KcViab                       text    html    latex   example
  data-KcViabSmall                  text    html    latex   example
  data-dualCh                       text    html    latex   example
  data-oldKcViabSmall               text    html    latex   example
  getDynamicRange                   text    html    latex   example
  getEnVisionRawData                text    html    latex   example
  getMeasureRepAgreement            text    html    latex   example
  getTopTable                       text    html    latex   example
  getZfactor                        text    html    latex   example
  imageScreen                       text    html    latex   example
  intensityFiles                    text    html    latex
  normalizePlates                   text    html    latex   example
Note: removing empty section \details in file 'oneRowPerId.Rd'
  oneRowPerId                       text    html    latex   example
  plate                             text    html    latex
  plateEffects                      text    html    latex
  plotSpatialEffects                text    html    latex   example
  readHTAnalystData                 text    html    latex   example
  readPlateList                     text    html    latex   example
  scoreReplicates                   text    html    latex   example
  scores2calls                      text    html    latex   example
Note: removing empty section \references in file 'spatialNormalization.Rd'
  spatialNormalization              text    html    latex   example
  state                             text    html    latex
  summarizeChannels                 text    html    latex   example
  summarizeReplicates               text    html    latex   example
  templateDescriptionFile           text    html    latex   example
  wellAnno                          text    html    latex
  write.tabdel                      text    html    latex   example
  writeReport                       text    html    latex   example
  writeTab                          text    html    latex   example
** building package indices ...
* DONE (cellHTS2)