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Package 127/294HostnameOS / ArchBUILDCHECKBUILD BIN
GSEAlm 1.2.0
Assaf Oron
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GSEAlm
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: GSEAlm
Version: 1.2.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes GSEAlm_1.2.0.tar.gz
StartedAt: 2009-04-18 19:01:58 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 19:02:40 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 42.6 seconds
RetCode: 0
Status: OK
CheckDir: GSEAlm.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/GSEAlm.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'GSEAlm/DESCRIPTION' ... OK
* this is package 'GSEAlm' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GSEAlm' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GSEAlm-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GSEAlm-manual.tex ... OK
* checking GSEAlm-manual.tex using pdflatex ... OK

GSEAlm.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/GSEAlm.Rcheck


---------- Making package GSEAlm ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package GSEAlm for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'GSEAlm'
     Formats: text html latex example chm 
  GSNormalize                       text    html    latex   example chm
  dfbetasPerGene                    text    html    latex   example chm
  getResidPerGene                   text    html    latex   example chm
Note: removing empty section \references in file 'gsealmPerm.Rd'
Note: removing empty section \references in file 'gsealmPerm.Rd'
  gsealmPerm                        text    html    latex   example chm
  lmPerGene                         text    html    latex   example chm
  resplot                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\GSEAlm.Rcheck\00_pkg_src\GSEAlm\chm\GSEAlm.chm


Compile time: 0 minutes, 0 seconds
7	Topics
37	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\GSEAlm.Rcheck\00_pkg_src\GSEAlm\chm\GSEAlm.chm, 38,247 bytes
Compression decreased file by 9,459 bytes.
  adding MD5 sums

* DONE (GSEAlm)