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Package 32/294HostnameOS / ArchBUILDCHECKBUILD BIN
BAC 1.2.0
Raphael Gottardo
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/BAC
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: BAC
Version: 1.2.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes BAC_1.2.0.tar.gz
StartedAt: 2009-04-18 18:10:21 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:14:21 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 239.6 seconds
RetCode: 0
Status: OK
CheckDir: BAC.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/BAC.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'BAC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BAC' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BAC' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BAC-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating BAC-manual.tex ... OK
* checking BAC-manual.tex using pdflatex ... OK

BAC.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-bioc/meat/BAC.Rcheck


---------- Making package BAC ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making BAC.d from BAC.c
making util.d from util.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c BAC.c -o BAC.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c util.c -o util.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i BAC_res.rc -o BAC_res.o
gcc  -std=gnu99  -shared -s  -o BAC.dll BAC.def BAC.o util.o BAC_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package BAC for lazy loading
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'BAC'
     Formats: text html latex example chm 
Note: removing empty section \note in file 'BAC.Rd'
Note: removing empty section \note in file 'BAC.Rd'
  BAC                               text    html    latex   example chm
Note: removing empty section \details in file 'CallRegions.Rd'
Note: removing empty section \note in file 'CallRegions.Rd'
Note: removing empty section \details in file 'CallRegions.Rd'
Note: removing empty section \note in file 'CallRegions.Rd'
  CallRegions                       text    html    latex   example chm
  ER                                text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-bioc\meat\BAC.Rcheck\00_pkg_src\BAC\chm\BAC.chm


Compile time: 0 minutes, 0 seconds
4	Topics
6	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-bioc\meat\BAC.Rcheck\00_pkg_src\BAC\chm\BAC.chm, 19,950 bytes
Compression increased file by 6,106 bytes.
  adding MD5 sums

* DONE (BAC)