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Package 8/294HostnameOS / ArchBUILDCHECKBUILD BIN
AffyCompatible 1.2.0
Martin Morgan
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/AffyCompatible
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ WARNINGS ] OK 
Package: AffyCompatible
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes AffyCompatible_1.2.0.tar.gz
StartedAt: 2009-04-18 16:44:28 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 16:49:09 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 281.5 seconds
RetCode: 0
Status: WARNINGS
CheckDir: AffyCompatible.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/AffyCompatible.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AffyCompatible' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AffyCompatible' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
xmlValue:
  function(x, ignoreComments, recursive)
xmlValue.XMLAttributeValue:
  function(x, ignoreComments)

xmlValue:
  function(x, ignoreComments, recursive)
xmlValue.XMLAttributeValue:
  function(x, ignoreComments)

See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating AffyCompatible-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating AffyCompatible-manual.tex ... OK
* checking AffyCompatible-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.3-bioc/meat/AffyCompatible.Rcheck/00check.log
for details

AffyCompatible.Rcheck/00install.out:

* Installing *source* package 'AffyCompatible' ...
** R
** inst
** preparing package for lazy loading
Loading required package: XML
Loading required package: RCurl
** help
 >>> Building/Updating help pages for package 'AffyCompatible'
     Formats: text html latex example 
  AffyCompatible-class              text    html    latex   example
  AffyCompatible-package            text    html    latex
  NetAffxResource-class             text    html    latex   example
  NetAffxResource                   text    html    latex
  accessors-NetAffxResource         text    html    latex
  readArr                           text    html    latex   example
  readMage                          text    html    latex   example
  readNetAffx                       text    html    latex   example
  readXml                           text    html    latex   example
  xclass                            text    html    latex   example
  zzz-.TypedAssociation-class       text    html    latex
  zzz-ARRCompatibility-class        text    html    latex   example
  zzz-DTTCompatibility-class        text    html    latex   example
  zzz-NetAffxCompatibility-class    text    html    latex   example
  zzz                               text    html    latex
** building package indices ...
* DONE (AffyCompatible)