pamr 1.38.0
Rob Tibshirani
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/pamr | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL pamr_1.38.0.tar.gz'
* Installing to library 'pamr.buildbin-libdir'
* Installing *source* package 'pamr' ...
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -march=nocona -c cox_func.c -o cox_func.o
gfortran -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fPIC -g -O2 -march=nocona -c knnimpute.f -o knnimpute.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c cox_func.c -o cox_func.o
gfortran -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -fPIC -g -O2 -c knnimpute.f -o knnimpute.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pamr.so cox_func.o knnimpute.o -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.3 -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** help
Note: removing empty section \source
Note: removing empty section \format
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: unmatched right brace in file 'pamr.confusion.survival.Rd' on or after line 24
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \examples
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: unmatched right brace in file 'pamr.listgenes.Rd' on or after line 8
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \references
Note: unmatched right brace in file 'pamr.plotcen.Rd' on or after line 7
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \references
Note: unmatched right brace in file 'pamr.predict.Rd' on or after line 8
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: unmatched right brace in file 'pamr.predictmany.Rd' on or after line 8
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: removing empty section \references
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
>>> Building/Updating help pages for package 'pamr'
Formats: text html latex example
khan text html latex
pamr.adaptthresh text html latex example
pamr.batchadjust text html latex example
pamr.confusion text html latex example
pamr.confusion.survival text html latex
pamr.cv text html latex example
pamr.decorrelate text html latex example
pamr.fdr text html latex example
pamr.from.excel text html latex
pamr.geneplot text html latex example
pamr.indeterminate text html latex example
pamr.internal text html latex
pamr.knnimpute text html latex
pamr.listgenes text html latex example
pamr.makeclasses text html latex example
pamr.menu text html latex example
pamr.plotcen text html latex example
pamr.plotcv text html latex example
pamr.plotcvprob text html latex example
pamr.plotfdr text html latex example
pamr.plotstrata text html latex example
pamr.plotsurvival text html latex example
pamr.predict text html latex example
pamr.predictmany text html latex example
pamr.surv.to.class2 text html latex example
pamr.test.errors.surv.compute text html latex example
pamr.to.excel text html latex
pamr.train text html latex example
** building package indices ...
* DONE (pamr)