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Package 29/260HostnameOS / ArchBUILDCHECKBUILD BIN
beadarray 1.8.0
Mark Dunning
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/beadarray
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
Package: beadarray
Version: 1.8.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh beadarray_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R beadarray.buildbin-libdir
StartedAt: 2008-10-16 06:55:31 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 06:56:04 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 33.0 seconds
RetCode: 0
Status: OK
PackageFile: beadarray_1.8.0.tgz
PackageFileSize: 28.55 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL beadarray_1.8.0.tar.gz'

* Installing to library 'beadarray.buildbin-libdir'
* Installing *source* package 'beadarray' ...
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c BLImagePlot.c -o BLImagePlot.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c createBeadSummaryData.c -o createBeadSummaryData.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c findProbeIndices.c -o findProbeIndices.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=nocona -c readBeadImages.c -o readBeadImages.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o beadarray.so BLImagePlot.o createBeadSummaryData.o findProbeIndices.o readBeadImages.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c BLImagePlot.c -o BLImagePlot.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c createBeadSummaryData.c -o createBeadSummaryData.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c findProbeIndices.c -o findProbeIndices.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c readBeadImages.c -o readBeadImages.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o beadarray.so BLImagePlot.o createBeadSummaryData.o findProbeIndices.o readBeadImages.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: limma
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
** help
 >>> Building/Updating help pages for package 'beadarray'
     Formats: text html latex example 
  BLData                            text    html    latex
  BSData                            text    html    latex
  arrayNames                        text    html    latex   example
  backgroundCorrect                 text    html    latex   example
  beadResids                        text    html    latex   example
  beadarrayUsersGuide               text    html    latex   example
  boxplotBeads                      text    html    latex   example
  class-BeadLevelList               text    html    latex
  class.ExpressionSetIllumina       text    html    latex
  combineBeadLevelLists             text    html    latex
  copyBeadLevelLists                text    html    latex   example
  createBeadSummaryData             text    html    latex   example
  findAllOutliers                   text    html    latex   example
  findBeadStatus                    text    html    latex   example
  getArrayData                      text    html    latex   example
  getVariance                       text    html    latex   example
  imageplot                         text    html    latex   example
  interactivePlots                  text    html    latex
  medianNormalise                   text    html    latex   example
  normaliseIllumina                 text    html    latex   example
  numBeads                          text    html    latex   example
  plotBeadDensities                 text    html    latex   example
  plotBeadIntensities               text    html    latex   example
  plotBeadLocations                 text    html    latex   example
  plotMA                            text    html    latex   example
  plotMAXY                          text    html    latex   example
  plotOnSAM                         text    html    latex
  plotRG                            text    html    latex   example
  plotXY                            text    html    latex   example
  qcBeadLevel                       text    html    latex   example
  rankInvariantNormalise            text    html    latex   example
  readBGX                           text    html    latex   example
  readBeadSummaryData               text    html    latex   example
  readIllumina                      text    html    latex   example
  readQC                            text    html    latex   example
** building package indices ...
Loading required package: methods
* DONE (beadarray)