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Package 250/260HostnameOS / ArchBUILDCHECKBUILD BIN
VanillaICE 1.2.0
Robert Scharpf
Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/VanillaICE
Last Changed Rev: 31430 / Revision: 34573
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: VanillaICE
Version: 1.2.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check VanillaICE_1.2.0.tar.gz
StartedAt: 2008-10-16 07:43:53 -0700 (Thu, 16 Oct 2008)
EndedAt: 2008-10-16 07:45:31 -0700 (Thu, 16 Oct 2008)
EllapsedTime: 97.6 seconds
RetCode: 0
Status: OK
CheckDir: VanillaICE.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/VanillaICE.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'VanillaICE/DESCRIPTION' ... OK
* this is package 'VanillaICE' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'VanillaICE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
addFeatureData: no visible binding for global variable 'chromosomeArm'
getChromosomeArm: no visible binding for global variable
  'chromosomeAnnotation'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating VanillaICE-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating VanillaICE-manual.tex ... OK
* checking VanillaICE-manual.tex using pdflatex ... OK

VanillaICE.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/VanillaICE.Rcheck


---------- Making package VanillaICE ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package VanillaICE for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'VanillaICE'
     Formats: text html latex example chm 
  HmmOptions-class                  text    html    latex   example chm
  HmmOptions-methods                text    html    latex           chm
  HmmParameter-class                text    html    latex   example chm
  HmmPredict-class                  text    html    latex   example chm
  addFeatureData                    text    html    latex           chm
  calculateBreakpoints              text    html    latex           chm
  calculateCnSE                     text    html    latex           chm
  calculateDistance                 text    html    latex           chm
  calls.ICE                         text    html    latex           chm
  calls.emission                    text    html    latex           chm
  chromosome1                       text    html    latex   example chm
  copyNumber.ICE                    text    html    latex           chm
  copyNumber.emission               text    html    latex           chm
  emission                          text    html    latex           chm
  fit                               text    html    latex   example chm
  genomicDistance                   text    html    latex           chm
  getChromosomeArm                  text    html    latex           chm
  hmm                               text    html    latex   example chm
  makeTable                         text    html    latex   example chm
  pi                                text    html    latex           chm
  scaleTransitionProbability        text    html    latex   example chm
  states                            text    html    latex           chm
  transitionScale                   text    html    latex           chm
  viterbi                           text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\VanillaICE.Rcheck\00_pkg_src\VanillaICE\chm\VanillaICE.chm


Compile time: 0 minutes, 0 seconds
25	Topics
136	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\VanillaICE.Rcheck\00_pkg_src\VanillaICE\chm\VanillaICE.chm, 38,723 bytes
Compression decreased file by 56,478 bytes.
  adding MD5 sums

* DONE (VanillaICE)