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Package 174/260HostnameOS / ArchBUILDCHECKBUILD BIN
PCpheno 1.2.0
Nolwenn Le Meur
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/PCpheno
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK [ WARNINGS ] OK 
Package: PCpheno
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/2.7/Resources/bin/R CMD check PCpheno_1.2.0.tar.gz
StartedAt: 2008-08-08 05:37:04 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 05:43:52 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 408.1 seconds
RetCode: 0
Status: WARNINGS
CheckDir: PCpheno.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.2-bioc/meat/PCpheno.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ASCII
* checking for file 'PCpheno/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PCpheno' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PCpheno' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic 'summary' and siglist 'DBIObject'
  generic 'summary' and siglist 'Bimap'
  generic 'summary' and siglist 'AnnDbBimap'
  generic 'summary' and siglist 'HyperGResultBase'
  generic 'summary' and siglist 'KEGGHyperGResult'
  generic 'summary' and siglist 'PFAMHyperGResult'
  generic 'summary' and siglist 'LinearMResultBase'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating PCpheno-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating PCpheno-manual.tex ... OK
* checking PCpheno-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.2-bioc/meat/PCpheno.Rcheck/00check.log
for details

PCpheno.Rcheck/00install.out:

* Installing *source* package 'PCpheno' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'PCpheno'
     Formats: text html latex example 
  CoHyperGParams-class              text    html    latex
  CoHyperGResult-class              text    html    latex   example
  Dudley                            text    html    latex   example
  Giaever                           text    html    latex   example
  HI                                text    html    latex   example
  KEGG2SCISI                        text    html    latex   example
  Kastenmayer                       text    html    latex   example
  Lesage                            text    html    latex   example
  Osterberg                         text    html    latex   example
  PCpheno.package                   text    html    latex
  SGDphenoL                         text    html    latex   example
  YEASTOHNOLOG                      text    html    latex   example
  buildFDMat                        text    html    latex   example
  categoryToEntrezBuilder           text    html    latex   example
  complexStatus                     text    html    latex   example
  deResult-class                    text    html    latex   example
  densityEstimate                   text    html    latex   example
  getDescr                          text    html    latex   example
  getFDgene                         text    html    latex   example
  graphTheory                       text    html    latex   example
  gtResult-class                    text    html    latex   example
  overlap                           text    html    latex   example
  plot                              text    html    latex   example
  ppiInteraction                    text    html    latex   example
  reduceM                           text    html    latex   example
  testResult-class                  text    html    latex
  truncName                         text    html    latex   example
** building package indices ...
* DONE (PCpheno)