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Package 114/260HostnameOS / ArchBUILDCHECKBUILD BIN
Harshlight 1.10.0
Maurizio Pellegrino
Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/Harshlight
Last Changed Rev: 31430 / Revision: 33132
Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: Harshlight
Version: 1.10.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check Harshlight_1.10.0.tar.gz
StartedAt: 2008-08-08 06:02:19 -0700 (Fri, 08 Aug 2008)
EndedAt: 2008-08-08 06:03:33 -0700 (Fri, 08 Aug 2008)
EllapsedTime: 74.3 seconds
RetCode: 0
Status: OK
CheckDir: Harshlight.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/Harshlight.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'Harshlight/DESCRIPTION' ... OK
* this is package 'Harshlight' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Harshlight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Harshlight: no visible binding for global variable 'sim'
Harshlight: no visible binding for global variable 'sim.int'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Harshlight-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Harshlight-manual.tex ... OK
* checking Harshlight-manual.tex using pdflatex ... OK

Harshlight.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/Harshlight.Rcheck


---------- Making package Harshlight ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making Harshlight.d from Harshlight.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c Harshlight.c -o Harshlight.o
Harshlight.c:157: warning: C99 inline functions are not supported; using GNU89
Harshlight.c:157: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
Harshlight.c: In function 'norm':
Harshlight.c:1316: warning: unused variable 'sorted2'
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1467: warning: unknown conversion type character ')' in format
Harshlight.c:1471: warning: unknown conversion type character ')' in format
Harshlight.c:1474: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532: warning: unknown conversion type character ')' in format
Harshlight.c:1542: warning: unknown conversion type character ')' in format
Harshlight.c:1543: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555: warning: unknown conversion type character ')' in format
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i Harshlight_res.rc -o Harshlight_res.o
gcc  -std=gnu99  -shared -s  -o Harshlight.dll Harshlight.def Harshlight.o Harshlight_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package Harshlight for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: altcdfenvs
Loading required package: matchprobes
Loading required package: makecdfenv
Loading required package: Biostrings
Loading required package: hypergraph
Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:Biostrings :

	 complement 


Attaching package: 'hypergraph'


	The following object(s) are masked from package:Biostrings :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'Harshlight'
     Formats: text html latex example chm 
  HarshComp                         text    html    latex           chm
  HarshExt                          text    html    latex           chm
  Harshlight                        text    html    latex   example chm
  sim                               text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\Harshlight.Rcheck\00_pkg_src\Harshlight\chm\Harshlight.chm


Compile time: 0 minutes, 0 seconds
5	Topics
11	Local links
3	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\Harshlight.Rcheck\00_pkg_src\Harshlight\chm\Harshlight.chm, 24,621 bytes
Compression decreased file by 1,912 bytes.
  adding MD5 sums

* DONE (Harshlight)