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Package 232/264HostnameOS / ArchBUILDCHECKBUILD BIN
simulatorAPMS 1.11.0
Tony Chiang
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/simulatorAPMS
Last Changed Rev: 27716 / Revision: 30951
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: simulatorAPMS
Version: 1.11.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check simulatorAPMS_1.11.0.tar.gz
StartedAt: 2008-04-09 10:53:14 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 10:57:32 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 258.2 seconds
RetCode: 0
Status: OK
CheckDir: simulatorAPMS.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/simulatorAPMS.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'simulatorAPMS/DESCRIPTION' ... OK
* this is package 'simulatorAPMS' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'simulatorAPMS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating simulatorAPMS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating simulatorAPMS-manual.tex ... OK
* checking simulatorAPMS-manual.tex using pdflatex ... OK

simulatorAPMS.Rcheck/00install.out:

* Installing *source* package 'simulatorAPMS' ...
** R
** data
** inst
** help
Note: removing empty section \source
Note: removing empty section \references
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Note: removing empty section \references
Note: removing empty section \details
Note: removing empty section \details
Note: unmatched right brace in 'filteredProt' on or after line 14
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
 >>> Building/Updating help pages for package 'simulatorAPMS'
     Formats: text html latex example 
  APComEX                           text    html    latex   example
  PPIEX                             text    html    latex   example
  TSNMatrix                         text    html    latex   example
  applyDeformationError             text    html    latex   example
  applyFNErrors                     text    html    latex   example
  applyFPErrors                     text    html    latex   example
  applyStickyError                  text    html    latex   example
  compIndep                         text    html    latex   example
  filteredProt                      text    html    latex   example
  fullSimEX                         text    html    latex   example
  missedProtEX                      text    html    latex   example
  missedProtHMSPCI                  text    html    latex   example
  recordSticky                      text    html    latex   example
  runAPComplex                      text    html    latex   example
  runCompIndep                      text    html    latex   example
  runSimEX                          text    html    latex   example
  runSimulators                     text    html    latex   example
  simEX                             text    html    latex   example
  simulator                         text    html    latex   example
  simulatorD                        text    html    latex   example
  simulatorS                        text    html    latex   example
  vBaits                            text    html    latex   example
  vBaitsEX                          text    html    latex   example
  vDeformEX                         text    html    latex   example
  vDeformed                         text    html    latex   example
  vDeformedEX                       text    html    latex   example
  vStickyEX                         text    html    latex   example
** building package indices ...
* DONE (simulatorAPMS)