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Package 137/251HostnameOS / ArchBUILDCHECKBUILD BIN
matchprobes 1.11.0
Biocore Team c/o BioC user list
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/matchprobes
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK [ OK ]
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: matchprobes
Version: 1.11.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check matchprobes_1.11.0.tar.gz
StartedAt: 2007-12-11 04:07:53 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:12:27 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 273.7 seconds
RetCode: 0
Status: OK
CheckDir: matchprobes.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/matchprobes.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-18 r43497)
* checking for file 'matchprobes/DESCRIPTION' ... OK
* this is package 'matchprobes' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'matchprobes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'print.probetable':
  print.probetable

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating matchprobes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating matchprobes-manual.tex ... OK
* checking matchprobes-manual.tex ... OK

matchprobes.Rcheck/00install.out:

* Installing *source* package 'matchprobes' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c strutils.c -o strutils.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o matchprobes.so matchprobes.o strutils.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
** help
 >>> Building/Updating help pages for package 'matchprobes'
     Formats: text html latex example 
  basecontent                       text    html    latex   example
  combineAffyBatch                  text    html    latex   example
  complementSeq                     text    html    latex   example
  getProbeDataAffy                  text    html    latex   example
  getProbeData_1lq                  text    html    latex   example
  longestConsecutive                text    html    latex   example
  makeProbePackage                  text    html    latex   example
  matchprobes                       text    html    latex   example
  print.probetable                  text    html    latex   example
  reverseSeq                        text    html    latex   example
** building package indices ...
* DONE (matchprobes)