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Package 69/251HostnameOS / ArchBUILDCHECKBUILD BIN
explorase 1.3.0
Michael Lawrence
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/explorase
Last Changed Rev: 28198 / Revision: 29143
Last Changed Date: 2007-10-24 12:05:01 -0700 (Wed, 24 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: explorase
Version: 1.3.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check explorase_1.3.0.tar.gz
StartedAt: 2007-12-11 05:57:26 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 05:59:44 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 137.8 seconds
RetCode: 0
Status: OK
CheckDir: explorase.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/explorase.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'explorase/DESCRIPTION' ... OK
* this is package 'explorase' version '1.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'explorase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating explorase-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './explorase.tex' ...
Package natbib Warning: Citation `Limma' on page 1 undefined on input line 47.
Package natbib Warning: Citation `metnet' on page 4 undefined on input line 130
Package natbib Warning: Citation `explorase-website' on page 7 undefined on inp
Package natbib Warning: Citation `explorase-website' on page 8 undefined on inp
Package natbib Warning: Citation `cytoscape' on page 11 undefined on input line
Package natbib Warning: Citation `Limma' on page 12 undefined on input line 504
Package natbib Warning: Citation `rattle' on page 12 undefined on input line 51
Package natbib Warning: Citation `RGtk2-website' on page 12 undefined on input 
Package natbib Warning: Citation `GTK' on page 12 undefined on input line 526.
Package natbib Warning: Citation `rggobi-website' on page 12 undefined on input
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './explorase.tex' ...
Package natbib Warning: Citation `Limma' on page 1 undefined on input line 47.
Package natbib Warning: Citation `metnet' on page 4 undefined on input line 130
Package natbib Warning: Citation `explorase-website' on page 7 undefined on inp
Package natbib Warning: Citation `explorase-website' on page 8 undefined on inp
Package natbib Warning: Citation `cytoscape' on page 11 undefined on input line
Package natbib Warning: Citation `Limma' on page 12 undefined on input line 504
Package natbib Warning: Citation `rattle' on page 12 undefined on input line 51
Package natbib Warning: Citation `RGtk2-website' on page 12 undefined on input 
Package natbib Warning: Citation `GTK' on page 12 undefined on input line 526.
Package natbib Warning: Citation `rggobi-website' on page 12 undefined on input
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './explorase.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './explorase.tex' ...
* creating explorase-manual.tex ... OK
* checking explorase-manual.tex ... OK

explorase.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/explorase.Rcheck
* Installing *source* package 'explorase' ...
** R
** inst
** preparing package for lazy loading
Loading required package: rggobi
Loading required package: RGtk2
Loading required package: limma
** help
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 >>> Building/Updating help pages for package 'explorase'
     Formats: text html latex example 
  exp-addEntityType-vx              text    html    latex
  exp-addFilterRule-rn              text    html    latex
  exp-calcAngleDist-31              text    html    latex
  exp-calcCanberraDist              text    html    latex
  exp-calcCorrelationDist-45        text    html    latex
  exp-calcDiff-y4                   text    html    latex
  exp-calcEuclideanDist-dn          text    html    latex
  exp-calcMahalanobisDist-r1        text    html    latex
  exp-calcResiduals-ps              text    html    latex
  exp-calcZeroCorDist-by            text    html    latex
  exp-close                         text    html    latex
  exp-colorEntities-1h              text    html    latex
  exp-dataset-6l                    text    html    latex
  exp-designFactors-72              text    html    latex
  exp-designFrame-d0                text    html    latex
  exp-designSelection-5s            text    html    latex
  exp-entitiesInList-df             text    html    latex
  exp-entityFrame-4j                text    html    latex
  exp-entitySelection-11            text    html    latex
  exp-entityType-69                 text    html    latex
  exp-entityTypes-9e                text    html    latex
  exp-filterRules-vt                text    html    latex
  exp-findPatterns-yw               text    html    latex
  exp-ggobi-69                      text    html    latex
  exp-isRunning-fo                  text    html    latex
  exp-listFrame-gp                  text    html    latex
  exp-listSelection                 text    html    latex
  exp-loadData-bo                   text    html    latex
  exp-loadDesign-35                 text    html    latex
  exp-loadFiles-1w                  text    html    latex
  exp-loadInfo-gk                   text    html    latex
  exp-loadLists-pr                  text    html    latex
  exp-loadProject-1g                text    html    latex
  exp-newList-bs                    text    html    latex
  exp-removeFilterRules-1i          text    html    latex
  exp-showClustering-b7             text    html    latex
  exp-showPatterns-bh               text    html    latex
  exp-showResults-sk                text    html    latex
  exp-toggleFilterRules-ts          text    html    latex
  explorase                         text    html    latex
** building package indices ...
* DONE (explorase)