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Package 242/251HostnameOS / ArchBUILDCHECKBUILD BIN
VanillaICE 1.1.3
Robert Scharpf
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE
Last Changed Rev: 28928 / Revision: 29143
Last Changed Date: 2007-11-27 07:23:14 -0800 (Tue, 27 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK [ OK ]
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: VanillaICE
Version: 1.1.3
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check VanillaICE_1.1.3.tar.gz
StartedAt: 2007-12-11 05:17:55 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 05:19:06 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 70.6 seconds
RetCode: 0
Status: OK
CheckDir: VanillaICE.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/VanillaICE.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-18 r43497)
* checking for file 'VanillaICE/DESCRIPTION' ... OK
* this is package 'VanillaICE' version '1.1.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'VanillaICE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating VanillaICE-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating VanillaICE-manual.tex ... OK
* checking VanillaICE-manual.tex ... OK

VanillaICE.Rcheck/00install.out:

* Installing *source* package 'VanillaICE' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
** help
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 >>> Building/Updating help pages for package 'VanillaICE'
     Formats: text html latex example 
  HmmSnpCallSet-class               text    html    latex   example
  HmmSnpCopyNumberSet-class         text    html    latex   example
  HmmSnpSet-class                   text    html    latex   example
  ParHSet-class                     text    html    latex   example
  ParHmmSnpCallSet-class            text    html    latex   example
  ParHmmSnpCopyNumberSet-class      text    html    latex   example
  ParHmmSnpSet-class                text    html    latex   example
  bind                              text    html    latex
  breakpoints                       text    html    latex   example
  byArm                             text    html    latex
  calculateEmissionProbability      text    html    latex
  callEmission                      text    html    latex   example
  callsIce                          text    html    latex
  chromosome1                       text    html    latex   example
  chromosomeArm                     text    html    latex
  copyNumberIce                     text    html    latex
  distance                          text    html    latex
  emissionProbability               text    html    latex
  getCallEmission                   text    html    latex
  getCopyNumberLocation             text    html    latex
  getCopyNumberScale                text    html    latex
  getHapmapProbabilities            text    html    latex
  getInitialStateProbability        text    html    latex   example
  getLohProbability                 text    html    latex
  getTransitionProbability          text    html    latex
  hSet-class                        text    html    latex   example
  hapmapProbabilities               text    html    latex
  hmm                               text    html    latex   example
  hmmBySample                       text    html    latex
  initialStateProbability           text    html    latex
  isMissing                         text    html    latex
  likelihood                        text    html    latex
  locationCopyNumber                text    html    latex
  numberStates                      text    html    latex
  pCHOM                             text    html    latex   example
  plotPredictions                   text    html    latex
  predictions                       text    html    latex
  scaleCopyNumber                   text    html    latex
  stateNames                        text    html    latex
  transitionProbability             text    html    latex
  viterbi                           text    html    latex
** building package indices ...
* DONE (VanillaICE)