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Package 88/251HostnameOS / ArchBUILDCHECKBUILD BIN
GeneticsBase 1.3.1
Gregory Warnes
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneticsBase
Last Changed Rev: 27963 / Revision: 29143
Last Changed Date: 2007-10-12 11:47:40 -0700 (Fri, 12 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: GeneticsBase
Version: 1.3.1
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneticsBase.buildbin-libdir GeneticsBase_1.3.1.tar.gz
StartedAt: 2007-12-11 06:30:42 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 06:31:22 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 39.4 seconds
RetCode: 0
Status: OK
PackageFile: GeneticsBase_1.3.1.zip
PackageFileSize: 1.951 MiB

Command output

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GeneticsBase.buildbin-libdir

Using auto-selected zip options ' GeneticsBase-HELP=ziponly'

---------- Making package GeneticsBase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making LdMax.d from LdMax.cpp
making convert.d from convert.cpp
making getLDdist.d from getLDdist.cpp
making readGenes.ped.d from readGenes.ped.cpp
making register.d from register.cpp
g++-sjlj   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c LdMax.cpp -o LdMax.o
g++-sjlj   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c convert.cpp -o convert.o
g++-sjlj   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c getLDdist.cpp -o getLDdist.o
g++-sjlj   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c readGenes.ped.cpp -o readGenes.ped.o
g++-sjlj   -IE:/biocbld/bbs-2.2-bioc/R/include     -O2 -Wall  -c register.cpp -o register.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.2-bioc/R/include  -i GeneticsBase_res.rc -o GeneticsBase_res.o
g++-sjlj   -shared -s  -o GeneticsBase.dll GeneticsBase.def LdMax.o convert.o getLDdist.o readGenes.ped.o register.o GeneticsBase_res.o  -LE:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package GeneticsBase for lazy loading
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
  installing man source files
  installing indices
Loading required package: methods
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
  not zipping data
  installing help
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 >>> Building/Updating help pages for package 'GeneticsBase'
     Formats: text html latex example chm 
  ALZH                              text    html    latex   example chm
  Armitage                          text    html    latex   example chm
  CAMP                              text    html    latex   example chm
  HWE                               text    html    latex   example chm
  HWE.chisq                         text    html    latex   example chm
  HWE.exact                         text    html    latex   example chm
  LD-class                          text    html    latex   example chm
  LD                                text    html    latex   example chm
  LDband-class                      text    html    latex   example chm
  LDdist-class                      text    html    latex           chm
  PGtables                          text    html    latex   example chm
  PerlgenExample                    text    html    latex   example chm
  PfizerExample                     text    html    latex   example chm
  alleleCount                       text    html    latex   example chm
  alleleLevels                      text    html    latex   example chm
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  convert                           text    html    latex   example chm
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  founderGeneSet                    text    html    latex   example chm
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  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5512\GeneticsBase\chm\GeneticsBase.chm





Compile time: 0 minutes, 1 second

70	Topics

266	Local links

8	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5512\GeneticsBase\chm\GeneticsBase.chm, 103,311 bytes

Compression decreased file by 191,321 bytes.

  adding MD5 sums

packaged installation of package 'GeneticsBase' as GeneticsBase_1.3.1.zip
* DONE (GeneticsBase)