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BioC 2.14: BUILD BIN report for inveRsion on petty

This page was generated on 2014-10-08 08:59:26 -0700 (Wed, 08 Oct 2014).

Package 417/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
inveRsion 1.12.1
Alejandro Caceres
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/inveRsion
Last Changed Rev: 90176 / Revision: 95116
Last Changed Date: 2014-05-09 15:54:26 -0700 (Fri, 09 May 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: inveRsion
Version: 1.12.1
Command: rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh inveRsion_1.12.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R inveRsion.buildbin-libdir
StartedAt: 2014-10-08 01:24:55 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:25:03 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 7.2 seconds
RetCode: 0
Status:  OK 
PackageFile: inveRsion_1.12.1.tgz
PackageFileSize: 534.2 KiB

Command output

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###
### Running command:
###
###   rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh inveRsion_1.12.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R inveRsion.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=inveRsion.buildbin-libdir inveRsion_1.12.1.tar.gz'
>>>>>>> 

* installing *source* package ‘inveRsion’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c init_inveRsion.c -o init_inveRsion.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c inversionModel.c -o inversionModel.o
inversionModel.c: In function ‘blockAndLev’:
inversionModel.c:185: warning: suggest parentheses around comparison in operand of &
inversionModel.c:167: warning: unused variable ‘ncol’
inversionModel.c:316:4: warning: "/*" within comment
inversionModel.c: In function ‘inversionModel’:
inversionModel.c:360: warning: suggest parentheses around comparison in operand of &
inversionModel.c:237: warning: unused variable ‘i’
inversionModel.c:237: warning: unused variable ‘ncol’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c writeGenoDat.c -o writeGenoDat.o
writeGenoDat.c: In function ‘writeGenoDat’:
writeGenoDat.c:36: warning: unused variable ‘fm’
writeGenoDat.c:36: warning: unused variable ‘fa’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o inveRsion.so init_inveRsion.o inversionModel.o writeGenoDat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/inveRsion.buildbin-libdir/inveRsion/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘inveRsion’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (inveRsion)


>>>>>>> 
>>>>>>> FIXING LINKS FOR inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"