Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.14: BUILD BIN report for ddgraph on morelia

This page was generated on 2014-10-08 09:05:34 -0700 (Wed, 08 Oct 2014).

Package 213/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ddgraph 1.8.0
Robert Stojnic
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/ddgraph
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: ddgraph
Version: 1.8.0
Command: rm -rf ddgraph.buildbin-libdir && mkdir ddgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ddgraph_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ddgraph.buildbin-libdir
StartedAt: 2014-10-08 02:51:58 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 02:52:09 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 11.4 seconds
RetCode: 0
Status:  OK 
PackageFile: ddgraph_1.8.0.tgz
PackageFileSize: 758.7 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ddgraph.buildbin-libdir && mkdir ddgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ddgraph_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ddgraph.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ddgraph.buildbin-libdir ddgraph_1.8.0.tar.gz'
>>>>>>> 

* installing *source* package ‘ddgraph’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c mcX2cloop.cpp -o mcX2cloop.o
mcX2cloop.cpp:14:2: warning: unused label 'Rcpp' [-Wunused-label]
        Rcpp:NumericVector res(iB);
        ^˜˜˜˜
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ddgraph.so mcX2cloop.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/ddgraph.buildbin-libdir/ddgraph/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ddgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"