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BioC experimental data: CHECK report for waveTilingData on moscato1

This page was generated on 2014-04-04 17:29:05 -0700 (Fri, 04 Apr 2014).

Package 174/181HostnameOS / ArchBUILDCHECKBUILD BIN
waveTilingData 0.99.3
Kristof De Beuf
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/waveTilingData
Last Changed Rev: 2533 / Revision: 2768
Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: waveTilingData
Version: 0.99.3
Command: rm -rf waveTilingData.buildbin-libdir && mkdir waveTilingData.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=waveTilingData.buildbin-libdir waveTilingData_0.99.3.tar.gz >waveTilingData-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=waveTilingData.buildbin-libdir --install="check:waveTilingData-install.out" --force-multiarch --no-vignettes --timings waveTilingData_0.99.3.tar.gz && mv waveTilingData.buildbin-libdir/* waveTilingData.Rcheck/ && rmdir waveTilingData.buildbin-libdir
StartedAt: 2014-04-04 12:45:15 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 12:52:48 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 452.8 seconds
RetCode: 0
Status:  OK  
CheckDir: waveTilingData.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/waveTilingData.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'waveTilingData/DESCRIPTION' ... OK
* this is package 'waveTilingData' version '0.99.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'waveTilingData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 240.8Mb
  sub-directories of 1Mb or more:
    data  240.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  No methods found in "IRanges" for requests: subseq
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [74s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
leafdev                  38.02   0.28   38.30
leafdevBQ                22.68   0.39   23.07
leafdevMapAndFilterTAIR9 10.28   0.06   10.34
** running examples for arch 'x64' ... [78s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
leafdev                  43.91   0.43   44.35
leafdevBQ                22.29   0.35   22.64
leafdevMapAndFilterTAIR9  8.82   0.07    8.88
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/waveTilingData.Rcheck/00check.log'
for details.

waveTilingData.Rcheck/00install.out:


install for i386

* installing *source* package 'waveTilingData' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'waveTilingData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'waveTilingData' as waveTilingData_0.99.3.zip
* DONE (waveTilingData)

waveTilingData.Rcheck/examples_i386/waveTilingData-Ex.timings:

nameusersystemelapsed
leafdev38.02 0.2838.30
leafdevBQ22.68 0.3923.07
leafdevFit0.860.060.92
leafdevInfCompare0.890.020.91
leafdevMapAndFilterTAIR910.28 0.0610.34

waveTilingData.Rcheck/examples_x64/waveTilingData-Ex.timings:

nameusersystemelapsed
leafdev43.91 0.4344.35
leafdevBQ22.29 0.3522.64
leafdevFit0.820.030.84
leafdevInfCompare0.820.000.83
leafdevMapAndFilterTAIR98.820.078.88