BioC experimental data: CHECK report for hgu2beta7 on moscato2

Package: hgu2beta7

Version: 1.2.8

Command: rm -rf hgu2beta7.buildbin-libdir && mkdir hgu2beta7.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hgu2beta7.buildbin-libdir hgu2beta7_1.2.8.tar.gz >hgu2beta7-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=hgu2beta7.buildbin-libdir --install="check:hgu2beta7-install.out" --force-multiarch --no-vignettes --timings hgu2beta7_1.2.8.tar.gz && mv hgu2beta7.buildbin-libdir/* hgu2beta7.Rcheck/ && rmdir hgu2beta7.buildbin-libdir

StartedAt: 2013-10-08 13:31:18 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:33:47 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 148.7 seconds

RetCode: 0

Status: WARNINGS

CheckDir: hgu2beta7.Rcheck

Warnings: 3

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/hgu2beta7.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.2.8'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: 'annotate'
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'Rdata.rdb' 'Rdata.rds' 'Rdata.rdx'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [7s] OK
** running examples for arch 'x64' ... [10s] OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/hgu2beta7.Rcheck/00check.log'
for details.

BioC experimental data: CHECK report for hgu2beta7 on moscato2

Summary

Command output