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BioC experimental data: CHECK report for davidTiling on moscato2

This page was generated on 2013-10-08 16:07:21 -0700 (Tue, 08 Oct 2013).

Package 36/156HostnameOS / ArchBUILDCHECKBUILD BIN
davidTiling 1.2.17
Wolfgang Huber
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/davidTiling
Last Changed Rev: 2317 / Revision: 2510
Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: davidTiling
Version: 1.2.17
Command: rm -rf davidTiling.buildbin-libdir && mkdir davidTiling.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=davidTiling.buildbin-libdir davidTiling_1.2.17.tar.gz >davidTiling-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=davidTiling.buildbin-libdir --install="check:davidTiling-install.out" --force-multiarch --no-vignettes --timings davidTiling_1.2.17.tar.gz && mv davidTiling.buildbin-libdir/* davidTiling.Rcheck/ && rmdir davidTiling.buildbin-libdir
StartedAt: 2013-10-08 13:07:48 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 13:22:30 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 882.2 seconds
RetCode: 0
Status:  OK  
CheckDir: davidTiling.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/davidTiling.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'davidTiling/DESCRIPTION' ... OK
* this is package 'davidTiling' version '1.2.17'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'davidTiling' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 538.0Mb
  sub-directories of 1Mb or more:
    celfiles  305.9Mb
    data      229.5Mb
    website     2.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GOHyperG: no visible global function definition for
  'replaceSystematicByCommonName'
scoreSegments: no visible binding for global variable 'yeastFeatures'
scoreSegments: no visible binding for global variable 'chrs'
* checking Rd files ... NOTE
prepare_Rd: GOHyperG.Rd:34-35: Dropping empty section \examples
prepare_Rd: getGO.Rd:32-33: Dropping empty section \examples
prepare_Rd: scatterWithHist.Rd:19-20: Dropping empty section \details
prepare_Rd: scoreSegments.Rd:103-104: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [70s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
davidTiling 51.89   0.85   52.88
probeAnno    7.84   0.18    8.01
** running examples for arch 'x64' ... [73s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
davidTiling 59.07   0.61   59.77
probeAnno    6.23   0.25    6.49
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/davidTiling.Rcheck/00check.log'
for details.

davidTiling.Rcheck/00install.out:


install for i386

* installing *source* package 'davidTiling' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'davidTiling' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'davidTiling' as davidTiling_1.2.17.zip
* DONE (davidTiling)