gwascat 1.4.0
VJ Carey
| Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/gwascat | | Last Changed Rev: 75263 / Revision: 81334 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | ERROR | skipped | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | ERROR | skipped | skipped |
* checking for file 'gwascat/DESCRIPTION' ... OK
* preparing 'gwascat':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:stats':
xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, as.data.frame,
cbind, colnames, duplicated, eval, get, intersect, lapply, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rep.int, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unlist
Loading required package: GenomicRanges
Loading required package: snpStats
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Attaching package: 'Matrix'
The following object is masked from 'package:IRanges':
expand
Loading required package: graph
NOTE: input data had non-ASCII characters replaced by '*'.
'gwcat' data frame now available, provides NHGRI GWAS cat records of 2012.09.22.
building 'gwrngs', GRanges for studies with located variants...
Loading required package: TxDb.Hsapiens.UCSC.hg19.knownGene
Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
NOTE: input data had non-ASCII characters replaced by '*'.
'gwcat' data frame now available, provides NHGRI GWAS cat records of 2012.09.22.
building 'gwrngs', GRanges for studies with located variants...
Loading required package: ggplot2
Need specific help about ggbio? try mailing
the maintainer or visit http://tengfei.github.com/ggbio/
Attaching package: 'ggbio'
The following objects are masked from 'package:ggplot2':
geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity,
xlim
Loading required package: grid
Loading required package: DBI
Warning: running command '"C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\texi2dvi.exe" --quiet --pdf "gwascat.tex" -I "E:/biocbld/bbs-2.12-bioc/R/share/texmf/tex/latex" -I "E:/biocbld/bbs-2.12-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'gwascat.tex' failed
LaTeX errors:
!pdfTeX error: C:\Program Files (x86)\MiKTeX 2.9\miktex\bin\pdflatex.EXE (file
E:/biocbld/bbs-2.12-bioc/tmpdir/RtmporR2H4/Rbuild5782d683972/gwascat/vignettes/
annman.pdf): PDF inclusion: required page does not exist <0>
==> Fatal error occurred, no output PDF file produced!
Execution halted