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Package 285/553HostnameOS / ArchBUILDCHECKBUILD BIN
inveRsion 1.4.0
Alejandro Caceres
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/inveRsion
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: inveRsion
Version: 1.4.0
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings inveRsion_1.4.0.tar.gz
StartedAt: 2012-09-24 01:44:49 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 01:45:20 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 30.8 seconds
RetCode: 0
Status:  OK 
CheckDir: inveRsion.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/inveRsion.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘inveRsion/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘inveRsion’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘inveRsion’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

inveRsion.Rcheck/00install.out:

* installing *source* package ‘inveRsion’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c init_inveRsion.c -o init_inveRsion.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c inversionModel.c -o inversionModel.o
inversionModel.c: In function ‘blockAndLev’:
inversionModel.c:185:9: warning: suggest parentheses around comparison in operand of ‘&’
inversionModel.c:167:8: warning: unused variable ‘ncol’
inversionModel.c: In function ‘inversionModel’:
inversionModel.c:316:4: warning: "/*" within comment
inversionModel.c:360:4: warning: suggest parentheses around comparison in operand of ‘&’
inversionModel.c:237:26: warning: unused variable ‘i’
inversionModel.c:237:8: warning: unused variable ‘ncol’
inversionModel.c:455:11: warning: ‘LoglikeInv’ may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c writeGenoDat.c -o writeGenoDat.o
writeGenoDat.c: In function ‘writeGenoDat’:
writeGenoDat.c:36:20: warning: unused variable ‘fm’
writeGenoDat.c:36:15: warning: unused variable ‘fa’
writeGenoDat.c:34:16: warning: ‘dat’ may be used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o inveRsion.so init_inveRsion.o inversionModel.o writeGenoDat.o -L/home/biocbuild/bbs-2.10-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-2.10-bioc/R/lib -lRblas -lgfortran -lm -L/home/biocbuild/bbs-2.10-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.10-bioc/meat/inveRsion.Rcheck/inveRsion/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘inveRsion’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘inveRsion.Rnw’ 
** testing if installed package can be loaded

* DONE (inveRsion)

inveRsion.Rcheck/inveRsion-Ex.timings:

nameusersystemelapsed
GenoDat-class0.0800.0000.083
GenoDatROI-class0.0120.0000.015
HaploCode-class0.1520.0000.161
ac0.0040.0000.004
accBic2.1280.0522.436
accuracy-class0.0040.0000.005
codeHaplo0.0960.0040.099
gDat0.0040.0000.010
getClassif-methods0.2160.0000.217
getInv-methods0.0040.0000.002
getROIs-methods0.0000.0000.002
hapCode0.0120.0000.011
invList0.0040.0000.004
inveRsion-package0.0000.0000.001
inversionList-class0.0040.0000.003
listInv-methods0.7360.0160.778
scan-class0.0080.0000.013
scanInv0.0320.0040.037
scanRes0.0120.0040.013
setUpGenoDatFile0.0120.0000.014