VegaMC 2.0.0
Sandro Morganella
| Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/VegaMC | | Last Changed Rev: 66383 / Revision: 69725 | | Last Changed Date: 2012-06-03 10:30:04 -0700 (Sun, 03 Jun 2012) |
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
install for i386
* installing *source* package 'VegaMC' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -O3 -Wall -std=gnu99 -mtune=core2 -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:461:29: warning: 'first_seg' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized in this function [-Wuninitialized]
gcc -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -O3 -Wall -std=gnu99 -mtune=core2 -c sort_data.c -o sort_data.o
gcc -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -O3 -Wall -std=gnu99 -mtune=core2 -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
gcc -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -LE:/biocbld/BBS-2˜1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/VegaMC.buildbin-libdir/VegaMC/libs/i386
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'density' when loading 'stats'
Warning: replacing previous import 'residuals' when loading 'stats'
** help
*** installing help indices
** building package indices
** installing vignettes
'VegaMC.Rnw'
** testing if installed package can be loaded
Warning: replacing previous import 'density' when loading 'stats'
Warning: replacing previous import 'residuals' when loading 'stats'
install for x64
* installing *source* package 'VegaMC' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized in this function [-Wuninitialized]
run_vegaMC.c:461:29: warning: 'first_seg' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c sort_data.c -o sort_data.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
gcc -m64 -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/VegaMC.buildbin-libdir/VegaMC/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'density' when loading 'stats'
Warning: replacing previous import 'residuals' when loading 'stats'
* MD5 sums
packaged installation of 'VegaMC' as VegaMC_2.0.0.zip
* DONE (VegaMC)