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Package 220/233HostnameOS / ArchBUILDCHECKBUILD BIN
tilingArray 1.16.0
W. Huber
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: tilingArray
Version: 1.16.0
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check tilingArray_1.16.0.tar.gz
StartedAt: 2008-04-09 18:56:04 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 18:57:48 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 103.9 seconds
RetCode: 0
Status: OK
CheckDir: tilingArray.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/tilingArray.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'tilingArray/DESCRIPTION' ... OK
* this is package 'tilingArray' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tilingArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating tilingArray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating tilingArray-manual.tex ... OK
* checking tilingArray-manual.tex ... OK


installing R.css in E:/biocbld/bbs-2.1-bioc/meat/tilingArray.Rcheck

---------- Making package tilingArray ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making findsegments.d from findsegments.c
making sampleStep.d from sampleStep.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c findsegments.c -o findsegments.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c sampleStep.c -o sampleStep.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i tilingArray_res.rc -o tilingArray_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o tilingArray.dll tilingArray.def findsegments.o sampleStep.o tilingArray_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package tilingArray for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo
Loading required package: sandwich
Loading required package: vsn
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: pixmap
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'tilingArray'
     Formats: text html latex example chm 
  PMindex                           text    html    latex   example chm
  breakpointsPretend                text    html    latex           chm
  class-segmentation                text    html    latex   example chm
  comparisonPlot                    text    html    latex   example chm
  costMatrix                        text    html    latex   example chm
  findsegments                      text    html    latex   example chm
  normalizeByReference              text    html    latex   example chm
  otherStrand                       text    html    latex   example chm
  plotAlongChrom                    text    html    latex   example chm
  plotAlongChromLegend              text    html    latex   example chm
  plotFeatures                      text    html    latex   example chm
  plotSegmentationDots              text    html    latex   example chm
  plotSegmentationHeatmap           text    html    latex   example chm
  plotpenLL                         text    html    latex   example chm
  posMin                            text    html    latex   example chm
  qcPlots                           text    html    latex   example chm
  readCel2eSet                      text    html    latex   example chm
  sampleStep                        text    html    latex   example chm
  segChrom                          text    html    latex   example chm
  segment                           text    html    latex   example chm
  tilingArray-package               text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\tilingArray.Rcheck\00_pkg_src\tilingArray\chm\tilingArray.chm

Compile time: 0 minutes, 0 seconds
22	Topics
65	Local links
1	Internet link
1	Graphic

Created e:\biocbld\bbs-2.1-bioc\meat\tilingArray.Rcheck\00_pkg_src\tilingArray\chm\tilingArray.chm, 55,862 bytes
Compression decreased file by 41,569 bytes.
  adding MD5 sums

* DONE (tilingArray)