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Package 166/233HostnameOS / ArchBUILDCHECKBUILD BIN
ppiStats 1.4.1
Tony Chiang
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/ppiStats
Last Changed Rev: 28113 / Revision: 30966
Last Changed Date: 2007-10-21 09:47:13 -0700 (Sun, 21 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  ERROR 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  ERROR 
wellington Linux (openSUSE 10.3) / i686  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ ERROR ] OK 
lemming Windows Server 2003 (32-bit) / x64  OK  ERROR  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  ERROR  OK 
Package: ppiStats
Version: 1.4.1
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check ppiStats_1.4.1.tar.gz
StartedAt: 2008-04-09 18:27:19 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 18:29:38 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 138.8 seconds
RetCode: 1
Status: ERROR
CheckDir: ppiStats.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.4.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
degreeEstimates: no visible global function definition for 'getDegrees'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'ppiStats-Ex.R' failed.
The error most likely occurred in:

> ### * calcInOutDegStats
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: calcInOutDegStats
> ### Title: This function calculates the various degree statistic for a
> ###   Protein-Protein Interaction (PPI) Graph
> ### Aliases: calcInOutDegStats
> ### Keywords: datagen
> 
> ### ** Examples
> 
>         library(ppiData)
>         degStat <- calcInOutDegStats(Cagney2001BPGraph)
Error in if (mode == "undirected") if (any(adjMat != t(adjMat))) stop("adjacency matrix must be symmetric for undirected graphs") : 
  argument is of length zero
Calls: calcInOutDegStats ... new -> initialize -> initialize -> .local -> <Anonymous>
Execution halted

ppiStats.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck


---------- Making package ppiStats ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ppiStats'
     Formats: text html latex example chm 
  assessSymmetry                    text    html    latex   example chm
  bpMatrix                          text    html    latex   example chm
  calcInOutDegStats                 text    html    latex   example chm
  degreeEstimates                   text    html    latex   example chm
  estErrProbMethodOfMoments         text    html    latex   example chm
  genBPGraph                        text    html    latex   example chm
  hgParams                          text    html    latex   example chm
  hgTests                           text    html    latex   example chm
  idProteinErrorType                text    html    latex   example chm
  idProteinType                     text    html    latex   example chm
  nullDistDoublyTestedEdges         text    html    latex   example chm
  twPERM                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm


Compile time: 0 minutes, 0 seconds
13	Topics
32	Local links
2	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm, 35,821 bytes
Compression decreased file by 15,403 bytes.
  adding MD5 sums

* DONE (ppiStats)