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Package 140/233HostnameOS / ArchBUILDCHECKBUILD BIN
multtest 1.18.0
Katherine S. Pollard
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/multtest
Last Changed Rev: 28558 / Revision: 30966
Last Changed Date: 2007-11-07 23:08:50 -0800 (Wed, 07 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: multtest
Version: 1.18.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check multtest_1.18.0.tar.gz
StartedAt: 2008-04-09 20:35:29 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 20:38:38 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 188.9 seconds
RetCode: 0
Status: OK
CheckDir: multtest.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/multtest.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'multtest/DESCRIPTION' ... OK
* this is package 'multtest' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'multtest' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
boot.null: no visible global function definition for 'clusterApply'
boot.null: no visible global function definition for 'clusterApplyLB'
lmX : <anonymous>: no visible global function definition for 'rlm'
lmY : <anonymous>: no visible global function definition for 'rlm'
MTP: no visible global function definition for 'makeCluster'
MTP: no visible global function definition for 'clusterEvalQ'
MTP: no visible global function definition for 'stopCluster'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating multtest-Ex.R ... OK
* checking examples ... OK
* creating multtest-manual.tex ... OK
* checking multtest-manual.tex ... OK

multtest.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/multtest.Rcheck


---------- Making package multtest ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making Rpack.d from Rpack.c
making block_sampling_fixed.d from block_sampling_fixed.c
making bootloop.d from bootloop.c
making mt.d from mt.c
making pairt_sampling.d from pairt_sampling.c
making pairt_sampling_fixed.d from pairt_sampling_fixed.c
making random.d from random.c
making sampling.d from sampling.c
making sampling_fixed.d from sampling_fixed.c
making stat_func.d from stat_func.c
making stat_order.d from stat_order.c
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c Rpack.c -o Rpack.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c bootloop.c -o bootloop.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c mt.c -o mt.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c pairt_sampling.c -o pairt_sampling.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c random.c -o random.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c sampling.c -o sampling.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c sampling_fixed.c -o sampling_fixed.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c stat_func.c -o stat_func.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include   -DUSEDOUBLE -DWINDOWS  -O3 -Wall  -c stat_order.c -o stat_order.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i multtest_res.rc -o multtest_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o multtest.dll multtest.def Rpack.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o multtest_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin -lm   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package multtest for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "as.list" in "multtest"
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'multtest'
     Formats: text html latex example chm 
  MTP-class                         text    html    latex   example chm
  MTP-methods                       text    html    latex           chm
  MTP                               text    html    latex   example chm
  boot.null                         text    html    latex   example chm
  fwer2gfwer                        text    html    latex   example chm
  get.index                         text    html    latex   example chm
  golub                             text    html    latex           chm
  meanX                             text    html    latex   example chm
  mt.internal                       text    html    latex           chm
  mt.maxT                           text    html    latex   example chm
  mt.plot                           text    html    latex   example chm
  mt.rawp2adjp                      text    html    latex   example chm
  mt.reject                         text    html    latex   example chm
  mt.sample.teststat                text    html    latex   example chm
  mt.teststat                       text    html    latex   example chm
  ss.maxT                           text    html    latex   example chm
  wapply                            text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\multtest.Rcheck\00_pkg_src\multtest\chm\multtest.chm

HHC4016: Warning: Cannot open "\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  adding MD5 sums

* DONE (multtest)