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Package 199/233HostnameOS / ArchBUILDCHECKBUILD BIN
SAGx 1.12.0
Per Broberg
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: SAGx
Version: 1.12.0
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build SAGx
StartedAt: 2008-04-09 16:15:51 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:16:33 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 42.1 seconds
RetCode: 0
Status: OK
PackageFile: SAGx_1.12.0.tar.gz
PackageFileSize: 184.7 KiB

Command output

* checking for file 'SAGx/DESCRIPTION' ... OK
* preparing 'SAGx':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst165636105

---------- Making package SAGx ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making minigsea.d from minigsea.c
making newboot.d from newboot.c
making samrocNboot.d from samrocNboot.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c minigsea.c -o minigsea.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c newboot.c -o newboot.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c samrocNboot.c -o samrocNboot.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i SAGx_res.rc -o SAGx_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o SAGx.dll SAGx.def minigsea.o newboot.o samrocNboot.o SAGx_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package SAGx for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'SAGx'
     Formats: text html latex example chm 
  Fstat                             text    html    latex   example chm
  GSEA.mean.t                       text    html    latex           chm
  JT.test                           text    html    latex   example chm
  R2BASE                            text    html    latex           chm
  R2mim                             text    html    latex           chm
  Xprep                             text    html    latex           chm
  Xprep.resid                       text    html    latex           chm
  clin2mim                          text    html    latex           chm
  cluster.q                         text    html    latex           chm
  estimatep0                        text    html    latex           chm
  fetchSignal                       text    html    latex   example chm
  firstpass                         text    html    latex   example chm
  fom                               text    html    latex           chm
  fp.fn                             text    html    latex           chm
  gap                               text    html    latex   example chm
  list.experiments                  text    html    latex   example chm
  list.intersection.p               text    html    latex           chm
  mat2TeX                           text    html    latex           chm
  myclus                            text    html    latex   example chm
  normalise                         text    html    latex           chm
  one.probeset.per.gene             text    html    latex           chm
  outlier                           text    html    latex   example chm                            text    html    latex           chm
  pava.fdr                          text    html    latex           chm
  pava                              text    html    latex   example chm
  rank.genes                        text    html    latex           chm
  rank.trend                        text    html    latex   example chm
  rsd.test                          text    html    latex           chm
  samroc.result-class               text    html    latex           chm
  samrocn                           text    html    latex           chm
  samrocnboot                       text    html    latex   example chm
  union.of.pways                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\SAGx\chm\SAGx.chm

Compile time: 0 minutes, 1 second

33	Topics

68	Local links

6	Internet links

1	Graphic

Created e:\biocbld\bbs-2.1-bioc\meat\SAGx\chm\SAGx.chm, 53,519 bytes

Compression decreased file by 38,863 bytes.

  adding MD5 sums

* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SAGx_1.12.0.tar.gz'