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Package 197/233HostnameOS / ArchBUILDCHECKBUILD BIN
SAGElyzer 1.16.0
Jianhua Zhang
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/SAGElyzer
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  WARNINGS  OK 
Package: SAGElyzer
Version: 1.16.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build SAGElyzer
StartedAt: 2008-04-09 16:00:45 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:01:55 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 70.0 seconds
RetCode: 0
Status: OK
PackageFile: SAGElyzer_1.16.0.tar.gz
PackageFileSize: 247 KiB

Command output

* checking for file 'SAGElyzer/DESCRIPTION' ... OK
* preparing 'SAGElyzer':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst497211242


---------- Making package SAGElyzer ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing exec files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'SAGElyzer'
     Formats: text html latex example chm 
  SAGELyzer                         text    html    latex   example chm
  SAGEMapper                        text    html    latex   example chm
  SAGEToolTips                      text    html    latex   example chm
  SAGEWidget                        text    html    latex   example chm
  con4Win                           text    html    latex   example chm
  getGEOSAGE                        text    html    latex   example chm
  getNormFactor                     text    html    latex   example chm
  getTargetRow                      text    html    latex   example chm
  mergeSAGE                         text    html    latex   example chm
  mergeSAGEWidget                   text    html    latex   example chm
  querySAGE                         text    html    latex   example chm
  support                           text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\SAGElyzer\chm\SAGElyzer.chm



HHC4016: Warning: Cannot open "\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  preparing package SAGElyzer for lazy loading
Loading required package: AnnBuilder
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done

Attaching package: 'widgetTools'


	The following object(s) are masked from package:xtable :

	 label 

Loading required package: DynDoc
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
  adding MD5 sums

* DONE (SAGElyzer)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SAGElyzer_1.16.0.tar.gz'