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Package 127/233HostnameOS / ArchBUILDCHECKBUILD BIN
MANOR 1.10.0
Pierre Neuvial
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64 [ OK ] OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: MANOR
Version: 1.10.0
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build MANOR
StartedAt: 2008-04-09 14:24:30 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 14:24:37 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 6.5 seconds
RetCode: 0
Status: OK
PackageFile: MANOR_1.10.0.tar.gz
PackageFileSize: 844 KiB

Command output

* checking for file 'MANOR/DESCRIPTION' ... OK
* preparing 'MANOR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'MANOR' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c exememo.c -o exememo.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c lib_io.c -o lib_io.o
lib_io.c: In function 'CountLinesColumns':
lib_io.c:354: warning: 'maxcols' may be used uninitialized in this function
lib_io.c:354: warning: 'mincols' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c nem_alg.c -o nem_alg.o
nem_alg.c: In function 'ClassifyByNemOneBeta':
nem_alg.c:1631: warning: 'bestbeta' may be used uninitialized in this function
nem_alg.c:1631: note: 'bestbeta' was declared here
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c nem_hlp.c -o nem_hlp.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c nem_mod.c -o nem_mod.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c nem_nei.c -o nem_nei.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c nem_rnd.c -o nem_rnd.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c nem_ver.c -o nem_ver.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c Rnem_arg.c -o Rnem_arg.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c Rnem_exe.c -o Rnem_exe.o
Rnem_exe.c: In function 'MakeErrinfo':
Rnem_exe.c:216: warning: cast from pointer to integer of different size
gcc -std=gnu99 -shared -L/usr/local/lib64 -o exememo.o lib_io.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o Rnem_arg.o Rnem_exe.o   -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GLAD
Loading required package: aws
Loading required package: tcltk
Loading Tcl/Tk interface ... done
[1] "Have fun with GLAD"
** help
 >>> Building/Updating help pages for package 'MANOR'
     Formats: text html latex example 
  MANOR-internal                    text    html    latex
  arrayTrend                        text    html    latex   example
  detectSB                          text    html    latex   example
  flag                              text    html    latex   example
  flag.arrayCGH                     text    html    latex   example
  flag.summary                      text    html    latex   example
  flags                             text    html    latex   example
  genome.plot                       text    html    latex   example                       text    html    latex   example
  import                            text    html    latex   example
  nem                               text    html    latex   example
  norm.arrayCGH                     text    html    latex   example
  qscore                            text    html    latex   example
  qscore.arrayCGH                   text    html    latex   example
  qscore.summary                    text    html    latex   example
  qscores                           text    html    latex   example
  report.plot                       text    html    latex   example
  sort.arrayCGH                     text    html    latex   example
  spatial                           text    html    latex   example
** building package indices ...
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'MANOR_1.10.0.tar.gz'