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Package 28/233HostnameOS / ArchBUILDCHECKBUILD BIN
BeadExplorer 1.4.0
Gareth Elvidge
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/BeadExplorer
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: BeadExplorer
Version: 1.4.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=BeadExplorer.buildbin-libdir BeadExplorer_1.4.0.tar.gz
StartedAt: 2008-04-09 22:49:38 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 22:50:36 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 58.4 seconds
RetCode: 0
Status: OK
PackageFile: BeadExplorer_1.4.0.zip
PackageFileSize: 2.431 MiB

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/BeadExplorer.buildbin-libdir

Using auto-selected zip options 'BeadExplorer-ZIPDATA=zip BeadExplorer-HELP=ziponly'

---------- Making package BeadExplorer ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
Note: unmatched right brace in 'beadData-class' on or after line 61
Note: unmatched right brace in 'beadData-class.Rd' on or after line 61
Note: unmatched right brace in 'readQC' on or after line 23
Note: unmatched right brace in 'readQC.Rd' on or after line 23
Note: unmatched right brace in 'scatterPlot' on or after line 44
Note: unmatched right brace in 'scatterPlot.Rd' on or after line 44
 >>> Building/Updating help pages for package 'BeadExplorer'
     Formats: text html latex example chm 
  HumRef8v1                         text    html    latex   example chm
  HumWG6v1                          text    html    latex   example chm
  addManifest                       text    html    latex   example chm
  batchAnalysis                     text    html    latex   example chm
  beadAnalysis                      text    html    latex   example chm
  beadData-accessor                 text    html    latex           chm
  beadData-class                    text    html    latex   example chm
  beadQC-class                      text    html    latex   example chm
  boxplotArrays                     text    html    latex   example chm
  boxplotQC                         text    html    latex   example chm
  clusterplot                       text    html    latex   example chm
  cutoff                            text    html    latex   example chm
  detectionCalls                    text    html    latex   example chm
  dotplotArrays                     text    html    latex   example chm
  dotplotQC                         text    html    latex   example chm
  examplebeadData                   text    html    latex   example chm
  examplebeadQC                     text    html    latex   example chm
  extract                           text    html    latex   example chm
  filterData                        text    html    latex   example chm
  getAnnot                          text    html    latex   example chm
  getArrayStats                     text    html    latex   example chm
  getDet                            text    html    latex   example chm
  getExprs                          text    html    latex   example chm
  getID                             text    html    latex   example chm
  getQC                             text    html    latex   example chm
  getQC2                            text    html    latex   example chm
  htmloutput                        text    html    latex   example chm
  multiDensity                      text    html    latex   example chm
  multiecdf                         text    html    latex   example chm
  normalise                         text    html    latex   example chm
  pc                                text    html    latex   example chm
  plotSamples                       text    html    latex   example chm
  readBead                          text    html    latex   example chm
  readManifest                      text    html    latex   example chm
  readQC                            text    html    latex   example chm
  scatterPlot                       text    html    latex   example chm
  write.beadData                    text    html    latex   example chm
  writeQC                           text    html    latex   example chm
  zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "gwin\bin;c:\Program Files\Subversion\bin;c:\Program Files\UltraEdit;c:\Program Files\Intel\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\image".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.2980\BeadExplorer\chm\BeadExplorer.chm



HHC4016: Warning: Cannot open "gwin\bin;c:\Program Files\Subversion\bin;c:\Program Files\UltraEdit;c:\Program Files\Intel\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\image".





The following files were not compiled:

  preparing package BeadExplorer for lazy loading
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: R2HTML
Loading required package: tkWidgets
Loading required package: DynDoc
  adding MD5 sums

packaged installation of package 'BeadExplorer' as BeadExplorer_1.4.0.zip
* DONE (BeadExplorer)