Package: pathRender

Version: 1.6.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check pathRender_1.6.0.tar.gz

RetCode: 0

Time: 52.3 seconds

Status: WARNINGS

CheckDir: pathRender.Rcheck

Warnings: 2

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/pathRender.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'pathRender/DESCRIPTION' ... OK
* this is package 'pathRender' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pathRender' can be installed ... WARNING
Found the following significant warnings:
       missing link(s):  graphNEL-class graph-class
See 'E:/biocbld/bbs-2.1-bioc/meat/pathRender.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating pathRender-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
*** Source Errors ***
File E:/biocbld/bbs-2.1-bioc/meat/pathRender.Rcheck/inst/doc/pwayRendAttrs.R :
Error in is.vector(X) : object "anslist" not found
* creating pathRender-manual.tex ... OK
* checking pathRender-manual.tex ... OK

WARNING: There were 2 warnings, see
  E:/biocbld/bbs-2.1-bioc/meat/pathRender.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/pathRender.Rcheck


---------- Making package pathRender ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package pathRender for lazy loading
Loading required package: graph
Loading required package: Rgraphviz
Loading required package: cMAP
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'pathRender'
     Formats: text html latex example chm 
  graphcMAP                         text    html    latex   example chm
  pwayGraph-class                   text    html    latex   example chm
     missing link(s):  graphNEL-class graph-class
  rendercMAP                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\pathRender.Rcheck\00_pkg_src\pathRender\chm\pathRender.chm


Compile time: 0 minutes, 0 seconds
4	Topics
7	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\pathRender.Rcheck\00_pkg_src\pathRender\chm\pathRender.chm, 19,007 bytes
Compression increased file by 5,882 bytes.
  adding MD5 sums

* DONE (pathRender)