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Package 12/234HostnameOSArchBUILDCHECKBUILD BIN
affypdnn 1.12.0
Laurent Gautier
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK [ OK ] OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: affypdnn
Version: 1.12.0
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check affypdnn_1.12.0.tar.gz
RetCode: 0
Time: 285.2 seconds
Status: OK
CheckDir: affypdnn.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/affypdnn.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'affypdnn/DESCRIPTION' ... OK
* this is package 'affypdnn' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affypdnn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'transform.ProbeSet':
  transform.ProbeSet

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating affypdnn-Ex.R ... OK
* checking examples ... OK
* creating affypdnn-manual.tex ... OK
* checking affypdnn-manual.tex ... OK

affypdnn.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/affypdnn.Rcheck


---------- Making package affypdnn ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'affypdnn'
     Formats: text html latex example chm 
  chiptype.pdnn.params              text    html    latex   example chm
  expressopdnn                      text    html    latex   example chm
  find.params.pdnn                  text    html    latex   example chm
  generateExprVal.method.pdnn       text    html    latex   example chm
  matplotProbesPDNN                 text    html    latex   example chm
  pdnn.params.chiptype              text    html    latex   example chm
  transform.ProbeSet                text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\affypdnn.Rcheck\00_pkg_src\affypdnn\chm\affypdnn.chm


Compile time: 0 minutes, 1 second
8	Topics
31	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\affypdnn.Rcheck\00_pkg_src\affypdnn\chm\affypdnn.chm, 27,595 bytes
Compression decreased file by 8,302 bytes.
  adding MD5 sums

* DONE (affypdnn)