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ScISI

1.8.0

Tony Chiang
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 (32-bit) x64  OK  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK [ OK ] OK 
derby Mac OS X (10.4.9) i686  ERROR skipped
Package: ScISI
Version: 1.8.0
Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check ScISI_1.8.0.tar.gz
RetCode: 0
Time: 303.3 seconds
Status: OK
CheckDir: ScISI.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.0-bioc/meat/ScISI.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'ScISI/DESCRIPTION' ... OK
* this is package 'ScISI' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ScISI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ScISI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ScISI-manual.tex ... OK
* checking ScISI-manual.tex ... OK

ScISI.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.0-bioc/meat/ScISI.Rcheck


---------- Making package ScISI ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ScISI'
     Formats: text html latex example chm 
  Desc-methods                      text    html    latex           chm
  ID-methods                        text    html    latex           chm
  JaccardCoef                       text    html    latex   example chm
  ScISI                             text    html    latex   example chm
  ScISI2html                        text    html    latex   example chm
  arp23                             text    html    latex   example chm
  arp23G                            text    html    latex   example chm
  arp23Orf                          text    html    latex   example chm
  arp23Y2HG                         text    html    latex   example chm
  calcGraphStats                    text    html    latex   example chm
  cfia                              text    html    latex   example chm
  cfiaOrf                           text    html    latex   example chm
  checkComplex                      text    html    latex   example chm
  checkSGN                          text    html    latex   example chm
  compBijection                     text    html    latex   example chm
  compareComplex                    text    html    latex   example chm
  createGODataFrame                 text    html    latex   example chm
  createGOMatrix                    text    html    latex   example chm
  createMipsDataFrame               text    html    latex   example chm
  createMipsMatrix                  text    html    latex   example chm
  createYeastDataObj                text    html    latex   example chm
  dataS                             text    html    latex   example chm
  eAt                               text    html    latex   example chm
  eAt2                              text    html    latex   example chm
  edgeProp                          text    html    latex   example chm
  egEBI16112                        text    html    latex   example chm
  expStats                          text    html    latex   example chm
  findSubComp                       text    html    latex   example chm
  gavin2mergeMG                     text    html    latex   example chm
  getAPMSData                       text    html    latex   example chm
  getGOInfo                         text    html    latex   example chm
  getLocOrfs                        text    html    latex   example chm
  getMipsInfo                       text    html    latex   example chm
  getURL-methods                    text    html    latex           chm
  graphSumStats                     text    html    latex   example chm
  ho2mergeMGG                       text    html    latex   example chm
  krogan2mergeMGGH                  text    html    latex   example chm
  list2Matrix                       text    html    latex   example chm
  locScISI                          text    html    latex   example chm
  mapping2SysG                      text    html    latex   example chm
  mappingsG                         text    html    latex   example chm
  maximizeSimilarity                text    html    latex   example chm
  meanDeg                           text    html    latex   example chm
  mergeBGMat                        text    html    latex   example chm
  mips2go                           text    html    latex   example chm
  nAt                               text    html    latex           chm
  nAtMap                            text    html    latex   example chm
  nucComp                           text    html    latex   example chm
  recCompSize                       text    html    latex   example chm
  redundantM                        text    html    latex   example chm
  rmByEvi                           text    html    latex   example chm
  runAlignment                      text    html    latex   example chm
  runCompareComplex                 text    html    latex   example chm
  subCompM                          text    html    latex   example chm
  sumStats                          text    html    latex   example chm
  unWantedComp                      text    html    latex   example chm
  xtraGO                            text    html    latex   example chm
  xtraGONodes                       text    html    latex   example chm
  yeastData-class                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.0-bioc\meat\ScISI.Rcheck\00_pkg_src\ScISI\chm\ScISI.chm


Compile time: 0 minutes, 2 seconds
60	Topics
146	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.0-bioc\meat\ScISI.Rcheck\00_pkg_src\ScISI\chm\ScISI.chm, 71,788 bytes
Compression decreased file by 86,350 bytes.
  preparing package ScISI for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RBGL
Loading required package: GO
Loading required package: GOstats
Loading required package: annotate
Loading required package: Category
Loading required package: KEGG
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Loading required package: Rgraphviz
Loading required package: geneplotter
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: YEAST
Loading required package: xtable
  adding MD5 sums

* DONE (ScISI)