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Package 121/208OSArchBUILDCHECKBUILD BIN

metaArray

1.7.1

Hyungwon Choi
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 10.1) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Windows Server 2003 NA[ ERROR ]skippedskipped
Mac OS X (10.4.6) i686 OK  OK 
Package: metaArray
Version: 1.7.1
Command: E:\biocbld\2.0d\R\bin\R.exe CMD build metaArray
RetCode: 1
Time: 28.7 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'metaArray/DESCRIPTION' ... OK
* preparing 'metaArray':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst522439791


---------- Making package metaArray ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making contr.d from contr.c
making dproc.d from dproc.c
making dproc2.d from dproc2.c
making intcor.d from intcor.c
making lowess.d from lowess.c
making mmath.d from mmath.c
making perm.d from perm.c
making poe.d from poe.c
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99 -DUSEDOUBLE -DWINDOWS  -c contr.c -o contr.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99 -DUSEDOUBLE -DWINDOWS  -c dproc.c -o dproc.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99 -DUSEDOUBLE -DWINDOWS  -c dproc2.c -o dproc2.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99 -DUSEDOUBLE -DWINDOWS  -c intcor.c -o intcor.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99 -DUSEDOUBLE -DWINDOWS  -c lowess.c -o lowess.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99 -DUSEDOUBLE -DWINDOWS  -c mmath.c -o mmath.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99 -DUSEDOUBLE -DWINDOWS  -c perm.c -o perm.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99 -DUSEDOUBLE -DWINDOWS  -c poe.c -o poe.o
poe.c: In function `poe_one_iter':
poe.c:132: warning: 'tmp1' might be used uninitialized in this function
windres --include-dir e:/biocbld/2.0d/R/include  -i metaArray_res.rc -o metaArray_res.o
gcc  -shared -s  -o metaArray.dll metaArray.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o metaArray_res.o  -Le:/biocbld/2.0d/R/bin -lm   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'metaArray'
     Formats: text html latex example chm 
  Zscore                            text    html    latex   example chm
  em.draw                           text    html    latex   example chm
  find.init                         text    html    latex   example chm
  fit.em                            text    html    latex   example chm
  intcor                            text    html    latex   example chm
  logit                             text    html    latex           chm
  mdata                             text    html    latex           chm
  poe.em                            text    html    latex   example chm
  poe.mcmc                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\2.0d\Rpacks\metaArray\chm\metaArray.chm





Compile time: 0 minutes, 0 seconds

10	Topics

13	Local links

0	Internet links

1	Graphic





Created e:\biocbld\2.0d\Rpacks\metaArray\chm\metaArray.chm, 26,162 bytes

Compression decreased file by 1,864 bytes.

  adding MD5 sums

* DONE (metaArray)
* creating vignettes ... ERROR
Loading required package: MergeMaid
Loading required package: survival
Loading required package: splines
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: MASS
entering extended mode
pdflatex.EXE: Windows API error 5: Access is denied.

texify: pdflatex failed for some reason (see log file).
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) : 
	running texi2dvi on 'metaArray.tex' failed
In addition: There were 27 warnings (use warnings() to see them)
Execution halted