Package: flowCore

Version: 0.3.00

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build flowCore

RetCode: 1

Time: 24.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'flowCore' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c biexponential.c -o biexponential.o
/var/tmp//cc05LPSK.s:359:indirect jmp without `*'
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c inPolygon.c -o inPolygon.o
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gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o   -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c biexponential.c -o biexponential.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c inPolygon.c -o inPolygon.o
gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o   -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
chmod: /private/tmp/Rinst2937347118/flowCore/data/*: No such file or directory
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: colorspace
Creating a new generic function for "plot" in "colorspace"

Attaching package: 'colorspace'


	The following object(s) are masked from package:grDevices :

	 hcl 

Loading required package: rrcov
Scalable Robust Estimators with High Breakdown Point (version 0.3-04)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
** help
 >>> Building/Updating help pages for package 'flowCore'
     Formats: text html latex example 
  filter-class                      text    html    latex
  filter                            text    html    latex   example
  filterResult-class                text    html    latex
  flowFrame-class                   text    html    latex   example
  flowSet-class                     text    html    latex   example
  logicleTransform                  text    html    latex   example
  plot                              text    html    latex   example
  read.FCS                          text    html    latex   example
  rectangleGate                     text    html    latex   example
  transform                         text    html    latex   example
  transformation-class              text    html    latex
** building package indices ...
* DONE (flowCore)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: colorspace
Creating a new generic function for "plot" in "colorspace"

Attaching package: 'colorspace'


	The following object(s) are masked from package:grDevices :

	 hcl 

Loading required package: rrcov
/Library/Frameworks/R.framework/Resources/bin/texi2dvi: pdflatex exited with bad status, quitting.
/Library/Frameworks/R.framework/Resources/bin/texi2dvi: see filtering-flowCore.log for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) : 
	running texi2dvi on 'filtering-flowCore.tex' failed
Execution halted