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matchprobes

1.6.0

Biocore Team
Last Changed Date: 2006-10-03 12:16:03 -0700
Last Changed Rev: 20373
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686  ERROR skipped
churchill Solaris 2.9 sparc [ ERROR ]skipped
lemming Windows Server 2003 x86_64  ERROR skippedskipped
Package: matchprobes
Version: 1.6.0
Command: /loc/biocbuild/bbs-1.9/R/bin/R CMD build matchprobes
RetCode: 1
Time: 284.4 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'matchprobes/DESCRIPTION' ... OK
* preparing 'matchprobes':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'matchprobes' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-1.9/R/include -I/loc/biocbuild/bbs-1.9/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-1.9/R/include -I/loc/biocbuild/bbs-1.9/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c strutils.c -o strutils.o
gcc -std=gnu99 -G -L/usr/local/lib -o matchprobes.so matchprobes.o strutils.o   
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
** help
 >>> Building/Updating help pages for package 'matchprobes'
     Formats: text html latex example 
  basecontent                       text    html    latex   example
  combineAffyBatch                  text    html    latex   example
  complementSeq                     text    html    latex   example
  getProbeDataAffy                  text    html    latex   example
  getProbeData_1lq                  text    html    latex   example
  longestConsecutive                text    html    latex   example
  makeProbePackage                  text    html    latex   example
  matchprobes                       text    html    latex   example
  print.probetable                  text    html    latex   example
  reverseSeq                        text    html    latex   example
** building package indices ...
* DONE (matchprobes)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio

Attaching package: 'hu6800cdf'


	The following object(s) are masked from package:hgu95av2cdf :

	 i2xy 

	The following object(s) are masked from package:hgu95av2cdf :

	 xy2i 


Error:  chunk 12 (label=makeprobepackage) 
Error in file(datafile, "r") : invalid 'description' argument
Error in buildVignettes(dir = ".") : Error:  chunk 12 (label=makeprobepackage) 
Error in file(datafile, "r") : invalid 'description' argument
Execution halted